Gene : Bradi3g46780 B. distachyon v3.1
Defline:  (1 of 1) PTHR10091//PTHR10091:SF9 - ALDOSE-1-EPIMERASE // SUBFAMILY NOT NAMED Genomic Order:  5799
Name:  ? Bradi3g46780 Secondary Identifier:  ? PAC:32812277
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY66-422 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g46780 0.5kb upstream 0.5kb upstream 4354 true Bd3: 48314647-48319000 Brachypodium distachyon
Bradi3g46780 0.5kb upstream 0.5kb upstream 500 false Bd3: 48314647-48315146 Brachypodium distachyon
Bradi3g46780 0.5kb downstream 0.5kb downstream 4354 true Bd3: 48315147-48319500 Brachypodium distachyon
Bradi3g46780 0.5kb downstream 0.5kb downstream 500 false Bd3: 48319001-48319500 Brachypodium distachyon
Bradi3g46780 1.0kb upstream 1.0kb upstream 4854 true Bd3: 48314147-48319000 Brachypodium distachyon
Bradi3g46780 1.0kb upstream 1.0kb upstream 1000 false Bd3: 48314147-48315146 Brachypodium distachyon
Bradi3g46780 1.0kb downstream 1.0kb downstream 4854 true Bd3: 48315147-48320000 Brachypodium distachyon
Bradi3g46780 1.0kb downstream 1.0kb downstream 1000 false Bd3: 48319001-48320000 Brachypodium distachyon
Bradi3g46780 2.0kb upstream 2.0kb upstream 5854 true Bd3: 48313147-48319000 Brachypodium distachyon
Bradi3g46780 2.0kb upstream 2.0kb upstream 2000 false Bd3: 48313147-48315146 Brachypodium distachyon
Bradi3g46780 2.0kb downstream 2.0kb downstream 5854 true Bd3: 48315147-48321000 Brachypodium distachyon
Bradi3g46780 2.0kb downstream 2.0kb downstream 2000 false Bd3: 48319001-48321000 Brachypodium distachyon
Bradi3g46780 5.0kb upstream 5.0kb upstream 8854 true Bd3: 48310147-48319000 Brachypodium distachyon
Bradi3g46780 5.0kb upstream 5.0kb upstream 5000 false Bd3: 48310147-48315146 Brachypodium distachyon
Bradi3g46780 5.0kb downstream 5.0kb downstream 8854 true Bd3: 48315147-48324000 Brachypodium distachyon
Bradi3g46780 5.0kb downstream 5.0kb downstream 5000 false Bd3: 48319001-48324000 Brachypodium distachyon
Bradi3g46780 10.0kb upstream 10.0kb upstream 13854 true Bd3: 48305147-48319000 Brachypodium distachyon
Bradi3g46780 10.0kb upstream 10.0kb upstream 10000 false Bd3: 48305147-48315146 Brachypodium distachyon
Bradi3g46780 10.0kb downstream 10.0kb downstream 13854 true Bd3: 48315147-48329000 Brachypodium distachyon
Bradi3g46780 10.0kb downstream 10.0kb downstream 10000 false Bd3: 48319001-48329000 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589656 5269 Grass View MSA
122044460 5273 Angiosperm View MSA
121310296 5274 Embryophyte View MSA
123425845 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.21        
cufflinks 0.076     Low  
cufflinks 0.244        
cufflinks 0.067     Low  
cufflinks 0.299        
cufflinks 0.086     Low  
cufflinks 0.107        
cufflinks 0.262        
cufflinks 0.144        
cufflinks 1.142       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.11        
cufflinks 0.023     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.136        
cufflinks 0.134        
cufflinks 0.123     Low  
cufflinks 0.146        
cufflinks 0.207        
cufflinks 0.35        
cufflinks 0.291        
cufflinks 0.518       High
cufflinks 0.126        
cufflinks 0.059     Low  
cufflinks 0.051     Low Low
cufflinks 0.374        
cufflinks 0.032     Low Low
cufflinks 0.602       High
cufflinks 0.597       High
cufflinks 0.237        

0 Strain