Gene : Bradi3g47067 B. distachyon v3.1
Defline:  (1 of 1) 2.2.1.9 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase / SEPHCHC synthase Genomic Order:  5835
Name:  ? Bradi3g47067 Secondary Identifier:  ? PAC:32815584
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5837 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g47067 0.5kb upstream 0.5kb upstream 15828 true Bd3: 48550216-48566043 Brachypodium distachyon
Bradi3g47067 0.5kb upstream 0.5kb upstream 500 false Bd3: 48550216-48550715 Brachypodium distachyon
Bradi3g47067 0.5kb downstream 0.5kb downstream 15828 true Bd3: 48550716-48566543 Brachypodium distachyon
Bradi3g47067 0.5kb downstream 0.5kb downstream 500 false Bd3: 48566044-48566543 Brachypodium distachyon
Bradi3g47067 1.0kb upstream 1.0kb upstream 16328 true Bd3: 48549716-48566043 Brachypodium distachyon
Bradi3g47067 1.0kb upstream 1.0kb upstream 1000 false Bd3: 48549716-48550715 Brachypodium distachyon
Bradi3g47067 1.0kb downstream 1.0kb downstream 16328 true Bd3: 48550716-48567043 Brachypodium distachyon
Bradi3g47067 1.0kb downstream 1.0kb downstream 1000 false Bd3: 48566044-48567043 Brachypodium distachyon
Bradi3g47067 2.0kb upstream 2.0kb upstream 17328 true Bd3: 48548716-48566043 Brachypodium distachyon
Bradi3g47067 2.0kb upstream 2.0kb upstream 2000 false Bd3: 48548716-48550715 Brachypodium distachyon
Bradi3g47067 2.0kb downstream 2.0kb downstream 17328 true Bd3: 48550716-48568043 Brachypodium distachyon
Bradi3g47067 2.0kb downstream 2.0kb downstream 2000 false Bd3: 48566044-48568043 Brachypodium distachyon
Bradi3g47067 5.0kb upstream 5.0kb upstream 20328 true Bd3: 48545716-48566043 Brachypodium distachyon
Bradi3g47067 5.0kb upstream 5.0kb upstream 5000 false Bd3: 48545716-48550715 Brachypodium distachyon
Bradi3g47067 5.0kb downstream 5.0kb downstream 20328 true Bd3: 48550716-48571043 Brachypodium distachyon
Bradi3g47067 5.0kb downstream 5.0kb downstream 5000 false Bd3: 48566044-48571043 Brachypodium distachyon
Bradi3g47067 10.0kb upstream 10.0kb upstream 25328 true Bd3: 48540716-48566043 Brachypodium distachyon
Bradi3g47067 10.0kb upstream 10.0kb upstream 10000 false Bd3: 48540716-48550715 Brachypodium distachyon
Bradi3g47067 10.0kb downstream 10.0kb downstream 25328 true Bd3: 48550716-48576043 Brachypodium distachyon
Bradi3g47067 10.0kb downstream 10.0kb downstream 10000 false Bd3: 48566044-48576043 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585464 5269 Grass View MSA
122043367 5273 Angiosperm View MSA
121345465 5274 Embryophyte View MSA
123425711 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.965        
cufflinks 7.856        
cufflinks 8.255        
cufflinks 5.104        
cufflinks 0.757        
cufflinks 6.134        
cufflinks 5.816        
cufflinks 3.608        
cufflinks 4.597        
cufflinks 3.408        
cufflinks 4.792        
cufflinks 5.882        
cufflinks 4.437        
cufflinks 3.097        
cufflinks 1.548        
cufflinks 7.259        
cufflinks 1.421        
cufflinks 1.211        
cufflinks 1.175        
cufflinks 0.095     Low Low
cufflinks 1.485        
cufflinks 8.541        
cufflinks 3.377        
cufflinks 3.636        
cufflinks 4.829        
cufflinks 7.137        
cufflinks 2.049        
cufflinks 6.239        
cufflinks 6.699        
cufflinks 5.238        

0 Strain