Gene : Bradi3g52470 B. distachyon v3.1
Defline:  (1 of 1) PTHR10169:SF38 - DNA TOPOISOMERASE 2 Genomic Order:  6517
Name:  ? Bradi3g52470 Secondary Identifier:  ? PAC:32817950
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g52470 0.5kb upstream 0.5kb upstream 7703 true Bd3: 53118061-53125763 Brachypodium distachyon
Bradi3g52470 0.5kb upstream 0.5kb upstream 500 false Bd3: 53125264-53125763 Brachypodium distachyon
Bradi3g52470 0.5kb downstream 0.5kb downstream 7703 true Bd3: 53117561-53125263 Brachypodium distachyon
Bradi3g52470 0.5kb downstream 0.5kb downstream 500 false Bd3: 53117561-53118060 Brachypodium distachyon
Bradi3g52470 1.0kb upstream 1.0kb upstream 8203 true Bd3: 53118061-53126263 Brachypodium distachyon
Bradi3g52470 1.0kb upstream 1.0kb upstream 1000 false Bd3: 53125264-53126263 Brachypodium distachyon
Bradi3g52470 1.0kb downstream 1.0kb downstream 8203 true Bd3: 53117061-53125263 Brachypodium distachyon
Bradi3g52470 1.0kb downstream 1.0kb downstream 1000 false Bd3: 53117061-53118060 Brachypodium distachyon
Bradi3g52470 2.0kb upstream 2.0kb upstream 9203 true Bd3: 53118061-53127263 Brachypodium distachyon
Bradi3g52470 2.0kb upstream 2.0kb upstream 2000 false Bd3: 53125264-53127263 Brachypodium distachyon
Bradi3g52470 2.0kb downstream 2.0kb downstream 9203 true Bd3: 53116061-53125263 Brachypodium distachyon
Bradi3g52470 2.0kb downstream 2.0kb downstream 2000 false Bd3: 53116061-53118060 Brachypodium distachyon
Bradi3g52470 5.0kb upstream 5.0kb upstream 12203 true Bd3: 53118061-53130263 Brachypodium distachyon
Bradi3g52470 5.0kb upstream 5.0kb upstream 5000 false Bd3: 53125264-53130263 Brachypodium distachyon
Bradi3g52470 5.0kb downstream 5.0kb downstream 12203 true Bd3: 53113061-53125263 Brachypodium distachyon
Bradi3g52470 5.0kb downstream 5.0kb downstream 5000 false Bd3: 53113061-53118060 Brachypodium distachyon
Bradi3g52470 10.0kb upstream 10.0kb upstream 17203 true Bd3: 53118061-53135263 Brachypodium distachyon
Bradi3g52470 10.0kb upstream 10.0kb upstream 10000 false Bd3: 53125264-53135263 Brachypodium distachyon
Bradi3g52470 10.0kb downstream 10.0kb downstream 17203 true Bd3: 53108061-53125263 Brachypodium distachyon
Bradi3g52470 10.0kb downstream 10.0kb downstream 10000 false Bd3: 53108061-53118060 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572411 5269 Grass View MSA
122046291 5273 Angiosperm View MSA
121345151 5274 Embryophyte View MSA
123423865 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.804        
cufflinks 9.312        
cufflinks 10.136        
cufflinks 6.298        
cufflinks 2.621        
cufflinks 8.491        
cufflinks 7.087        
cufflinks 5.179        
cufflinks 6.727        
cufflinks 4.259        
cufflinks 0.132       Low
cufflinks 8.022        
cufflinks 0.105       Low
cufflinks 0.086       Low
cufflinks 1.013        
cufflinks 8.186        
cufflinks 3.524        
cufflinks 12.526     High High
cufflinks 4.159        
cufflinks 0.814        
cufflinks 2.662        
cufflinks 10.097     High  
cufflinks 4.873        
cufflinks 4.464        
cufflinks 6.168        
cufflinks 7.381        
cufflinks 0.115       Low
cufflinks 6.271        
cufflinks 6.623        
cufflinks 9.744        

0 Strain