Gene : Bradi3g52560 B. distachyon v3.1
Defline:  (1 of 1) K05928 - tocopherol O-methyltransferase (E2.1.1.95) Genomic Order:  6529
Name:  ? Bradi3g52560 Secondary Identifier:  ? PAC:32820212
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-1422 Brachypodium distachyon pathologic  
Bdistachyon PWY-7436 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g52560 0.5kb upstream 0.5kb upstream 3909 true Bd3: 53225560-53229468 Brachypodium distachyon
Bradi3g52560 0.5kb upstream 0.5kb upstream 500 false Bd3: 53225560-53226059 Brachypodium distachyon
Bradi3g52560 0.5kb downstream 0.5kb downstream 3909 true Bd3: 53226060-53229968 Brachypodium distachyon
Bradi3g52560 0.5kb downstream 0.5kb downstream 500 false Bd3: 53229469-53229968 Brachypodium distachyon
Bradi3g52560 1.0kb upstream 1.0kb upstream 4409 true Bd3: 53225060-53229468 Brachypodium distachyon
Bradi3g52560 1.0kb upstream 1.0kb upstream 1000 false Bd3: 53225060-53226059 Brachypodium distachyon
Bradi3g52560 1.0kb downstream 1.0kb downstream 4409 true Bd3: 53226060-53230468 Brachypodium distachyon
Bradi3g52560 1.0kb downstream 1.0kb downstream 1000 false Bd3: 53229469-53230468 Brachypodium distachyon
Bradi3g52560 2.0kb upstream 2.0kb upstream 5409 true Bd3: 53224060-53229468 Brachypodium distachyon
Bradi3g52560 2.0kb upstream 2.0kb upstream 2000 false Bd3: 53224060-53226059 Brachypodium distachyon
Bradi3g52560 2.0kb downstream 2.0kb downstream 5409 true Bd3: 53226060-53231468 Brachypodium distachyon
Bradi3g52560 2.0kb downstream 2.0kb downstream 2000 false Bd3: 53229469-53231468 Brachypodium distachyon
Bradi3g52560 5.0kb upstream 5.0kb upstream 8409 true Bd3: 53221060-53229468 Brachypodium distachyon
Bradi3g52560 5.0kb upstream 5.0kb upstream 5000 false Bd3: 53221060-53226059 Brachypodium distachyon
Bradi3g52560 5.0kb downstream 5.0kb downstream 8409 true Bd3: 53226060-53234468 Brachypodium distachyon
Bradi3g52560 5.0kb downstream 5.0kb downstream 5000 false Bd3: 53229469-53234468 Brachypodium distachyon
Bradi3g52560 10.0kb upstream 10.0kb upstream 13409 true Bd3: 53216060-53229468 Brachypodium distachyon
Bradi3g52560 10.0kb upstream 10.0kb upstream 10000 false Bd3: 53216060-53226059 Brachypodium distachyon
Bradi3g52560 10.0kb downstream 10.0kb downstream 13409 true Bd3: 53226060-53239468 Brachypodium distachyon
Bradi3g52560 10.0kb downstream 10.0kb downstream 10000 false Bd3: 53229469-53239468 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569440 5269 Grass View MSA
122044817 5273 Angiosperm View MSA
121347406 5274 Embryophyte View MSA
123427925 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.876     High High
cufflinks 18.741     High  
cufflinks 21.327     High  
cufflinks 21.888     High  
cufflinks 36.655     High  
cufflinks 19.824     High  
cufflinks 18.597     High  
cufflinks 24.196     High  
cufflinks 22.298     High  
cufflinks 27.226     High  
cufflinks 37.99     High High
cufflinks 17.713     High  
cufflinks 26.223     High  
cufflinks 34.541     High  
cufflinks 43.775     High High
cufflinks 17.675     High  
cufflinks 29.074     High  
cufflinks 5.326       Low
cufflinks 17.813     High  
cufflinks 27.306     High  
cufflinks 14.7     High  
cufflinks 20.243     High  
cufflinks 25.1     High  
cufflinks 24.157     High  
cufflinks 23.245     High  
cufflinks 19.432     High  
cufflinks 29.669     High  
cufflinks 21.926     High  
cufflinks 22.186     High  
cufflinks 10.331       Low

0 Strain