Gene : Bradi3g52727 B. distachyon v3.1
Defline:  (1 of 1) 2.1.3.3 - Ornithine carbamoyltransferase / OTCase Genomic Order:  6548
Name:  ? Bradi3g52727 Secondary Identifier:  ? PAC:32821020
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ARGSYNBSUB-PWY Brachypodium distachyon pathologic  
Bdistachyon ARGSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon CITRULBIO-PWY Brachypodium distachyon pathologic  
Bdistachyon CITRULLINE-DEG-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-4984 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g52727 0.5kb upstream 0.5kb upstream 4339 true Bd3: 53352035-53356373 Brachypodium distachyon
Bradi3g52727 0.5kb upstream 0.5kb upstream 500 false Bd3: 53352035-53352534 Brachypodium distachyon
Bradi3g52727 0.5kb downstream 0.5kb downstream 4339 true Bd3: 53352535-53356873 Brachypodium distachyon
Bradi3g52727 0.5kb downstream 0.5kb downstream 500 false Bd3: 53356374-53356873 Brachypodium distachyon
Bradi3g52727 1.0kb upstream 1.0kb upstream 4839 true Bd3: 53351535-53356373 Brachypodium distachyon
Bradi3g52727 1.0kb upstream 1.0kb upstream 1000 false Bd3: 53351535-53352534 Brachypodium distachyon
Bradi3g52727 1.0kb downstream 1.0kb downstream 4839 true Bd3: 53352535-53357373 Brachypodium distachyon
Bradi3g52727 1.0kb downstream 1.0kb downstream 1000 false Bd3: 53356374-53357373 Brachypodium distachyon
Bradi3g52727 2.0kb upstream 2.0kb upstream 5839 true Bd3: 53350535-53356373 Brachypodium distachyon
Bradi3g52727 2.0kb upstream 2.0kb upstream 2000 false Bd3: 53350535-53352534 Brachypodium distachyon
Bradi3g52727 2.0kb downstream 2.0kb downstream 5839 true Bd3: 53352535-53358373 Brachypodium distachyon
Bradi3g52727 2.0kb downstream 2.0kb downstream 2000 false Bd3: 53356374-53358373 Brachypodium distachyon
Bradi3g52727 5.0kb upstream 5.0kb upstream 8839 true Bd3: 53347535-53356373 Brachypodium distachyon
Bradi3g52727 5.0kb upstream 5.0kb upstream 5000 false Bd3: 53347535-53352534 Brachypodium distachyon
Bradi3g52727 5.0kb downstream 5.0kb downstream 8839 true Bd3: 53352535-53361373 Brachypodium distachyon
Bradi3g52727 5.0kb downstream 5.0kb downstream 5000 false Bd3: 53356374-53361373 Brachypodium distachyon
Bradi3g52727 10.0kb upstream 10.0kb upstream 13839 true Bd3: 53342535-53356373 Brachypodium distachyon
Bradi3g52727 10.0kb upstream 10.0kb upstream 10000 false Bd3: 53342535-53352534 Brachypodium distachyon
Bradi3g52727 10.0kb downstream 10.0kb downstream 13839 true Bd3: 53352535-53366373 Brachypodium distachyon
Bradi3g52727 10.0kb downstream 10.0kb downstream 10000 false Bd3: 53356374-53366373 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573214 5269 Grass View MSA
122042632 5273 Angiosperm View MSA
121351468 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.221     High  
cufflinks 22.69     High High
cufflinks 21.428     High  
cufflinks 22.21     High High
cufflinks 10.655     High Low
cufflinks 18.15     High  
cufflinks 20.519     High  
cufflinks 17.903     High  
cufflinks 18.021     High  
cufflinks 17.136     High  
cufflinks 12.833     High  
cufflinks 18.72     High  
cufflinks 13.31     High  
cufflinks 14.553     High  
cufflinks 14.08     High  
cufflinks 19.092     High  
cufflinks 18.926     High  
cufflinks 14.54     High  
cufflinks 19.446     High  
cufflinks 7.289       Low
cufflinks 16.135     High  
cufflinks 19.395     High  
cufflinks 16.347     High  
cufflinks 17.285     High  
cufflinks 18.687     High  
cufflinks 18.964     High  
cufflinks 8.573       Low
cufflinks 19.1     High  
cufflinks 19.61     High  
cufflinks 18.276     High  

0 Strain