Gene : Bradi3g52960 B. distachyon v3.1
Defline:  (1 of 1) PTHR12801:SF56 - EXONUCLEASE FAMILY PROTEIN Genomic Order:  6573
Name:  ? Bradi3g52960 Secondary Identifier:  ? PAC:32816532
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g52960 0.5kb upstream 0.5kb upstream 2839 true Bd3: 53529530-53532368 Brachypodium distachyon
Bradi3g52960 0.5kb upstream 0.5kb upstream 500 false Bd3: 53529530-53530029 Brachypodium distachyon
Bradi3g52960 0.5kb downstream 0.5kb downstream 2839 true Bd3: 53530030-53532868 Brachypodium distachyon
Bradi3g52960 0.5kb downstream 0.5kb downstream 500 false Bd3: 53532369-53532868 Brachypodium distachyon
Bradi3g52960 1.0kb upstream 1.0kb upstream 3339 true Bd3: 53529030-53532368 Brachypodium distachyon
Bradi3g52960 1.0kb upstream 1.0kb upstream 1000 false Bd3: 53529030-53530029 Brachypodium distachyon
Bradi3g52960 1.0kb downstream 1.0kb downstream 3339 true Bd3: 53530030-53533368 Brachypodium distachyon
Bradi3g52960 1.0kb downstream 1.0kb downstream 1000 false Bd3: 53532369-53533368 Brachypodium distachyon
Bradi3g52960 2.0kb upstream 2.0kb upstream 4339 true Bd3: 53528030-53532368 Brachypodium distachyon
Bradi3g52960 2.0kb upstream 2.0kb upstream 2000 false Bd3: 53528030-53530029 Brachypodium distachyon
Bradi3g52960 2.0kb downstream 2.0kb downstream 4339 true Bd3: 53530030-53534368 Brachypodium distachyon
Bradi3g52960 2.0kb downstream 2.0kb downstream 2000 false Bd3: 53532369-53534368 Brachypodium distachyon
Bradi3g52960 5.0kb upstream 5.0kb upstream 7339 true Bd3: 53525030-53532368 Brachypodium distachyon
Bradi3g52960 5.0kb upstream 5.0kb upstream 5000 false Bd3: 53525030-53530029 Brachypodium distachyon
Bradi3g52960 5.0kb downstream 5.0kb downstream 7339 true Bd3: 53530030-53537368 Brachypodium distachyon
Bradi3g52960 5.0kb downstream 5.0kb downstream 5000 false Bd3: 53532369-53537368 Brachypodium distachyon
Bradi3g52960 10.0kb upstream 10.0kb upstream 12339 true Bd3: 53520030-53532368 Brachypodium distachyon
Bradi3g52960 10.0kb upstream 10.0kb upstream 10000 false Bd3: 53520030-53530029 Brachypodium distachyon
Bradi3g52960 10.0kb downstream 10.0kb downstream 12339 true Bd3: 53530030-53542368 Brachypodium distachyon
Bradi3g52960 10.0kb downstream 10.0kb downstream 10000 false Bd3: 53532369-53542368 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578674 5269 Grass View MSA
122048562 5273 Angiosperm View MSA
121349670 5274 Embryophyte View MSA
123428502 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.614        
cufflinks 0.085     Low  
cufflinks 0.104        
cufflinks 0.141        
cufflinks 0.725       High
cufflinks 0.188        
cufflinks 0.13        
cufflinks 0.889       High
cufflinks 0.564        
cufflinks 0.722       High
cufflinks 0.321        
cufflinks 0.169        
cufflinks 0.314        
cufflinks 0.282        
cufflinks 1.642       High
cufflinks 0.15        
cufflinks 0.78       High
cufflinks 0.018     Low Low
cufflinks 0.215        
cufflinks 0.396        
cufflinks 0.312        
cufflinks 0.609        
cufflinks 1.307       High
cufflinks 0.537        
cufflinks 0.177        
cufflinks 0.089     Low  
cufflinks 1.003       High
cufflinks 0.199        
cufflinks 0.255        
cufflinks 0.14        

0 Strain