Gene : Bradi3g52847 B. distachyon v3.1
Defline:  (1 of 3) PTHR10992//PTHR10992:SF782 - ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN Genomic Order:  6561
Name:  ? Bradi3g52847 Secondary Identifier:  ? PAC:32815317
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon LIPAS-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g52847 0.5kb upstream 0.5kb upstream 2927 true Bd3: 53442364-53445290 Brachypodium distachyon
Bradi3g52847 0.5kb upstream 0.5kb upstream 500 false Bd3: 53444791-53445290 Brachypodium distachyon
Bradi3g52847 0.5kb downstream 0.5kb downstream 2927 true Bd3: 53441864-53444790 Brachypodium distachyon
Bradi3g52847 0.5kb downstream 0.5kb downstream 500 false Bd3: 53441864-53442363 Brachypodium distachyon
Bradi3g52847 1.0kb upstream 1.0kb upstream 3427 true Bd3: 53442364-53445790 Brachypodium distachyon
Bradi3g52847 1.0kb upstream 1.0kb upstream 1000 false Bd3: 53444791-53445790 Brachypodium distachyon
Bradi3g52847 1.0kb downstream 1.0kb downstream 3427 true Bd3: 53441364-53444790 Brachypodium distachyon
Bradi3g52847 1.0kb downstream 1.0kb downstream 1000 false Bd3: 53441364-53442363 Brachypodium distachyon
Bradi3g52847 2.0kb upstream 2.0kb upstream 4427 true Bd3: 53442364-53446790 Brachypodium distachyon
Bradi3g52847 2.0kb upstream 2.0kb upstream 2000 false Bd3: 53444791-53446790 Brachypodium distachyon
Bradi3g52847 2.0kb downstream 2.0kb downstream 4427 true Bd3: 53440364-53444790 Brachypodium distachyon
Bradi3g52847 2.0kb downstream 2.0kb downstream 2000 false Bd3: 53440364-53442363 Brachypodium distachyon
Bradi3g52847 5.0kb upstream 5.0kb upstream 7427 true Bd3: 53442364-53449790 Brachypodium distachyon
Bradi3g52847 5.0kb upstream 5.0kb upstream 5000 false Bd3: 53444791-53449790 Brachypodium distachyon
Bradi3g52847 5.0kb downstream 5.0kb downstream 7427 true Bd3: 53437364-53444790 Brachypodium distachyon
Bradi3g52847 5.0kb downstream 5.0kb downstream 5000 false Bd3: 53437364-53442363 Brachypodium distachyon
Bradi3g52847 10.0kb upstream 10.0kb upstream 12427 true Bd3: 53442364-53454790 Brachypodium distachyon
Bradi3g52847 10.0kb upstream 10.0kb upstream 10000 false Bd3: 53444791-53454790 Brachypodium distachyon
Bradi3g52847 10.0kb downstream 10.0kb downstream 12427 true Bd3: 53432364-53444790 Brachypodium distachyon
Bradi3g52847 10.0kb downstream 10.0kb downstream 10000 false Bd3: 53432364-53442363 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571388 5269 Grass View MSA
122043617 5273 Angiosperm View MSA
123428977 5275 Viridiplantae View MSA
121351643 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.784        
cufflinks 1.133        
cufflinks 1.727        
cufflinks 1.166        
cufflinks 1.062        
cufflinks 1.247        
cufflinks 1.261        
cufflinks 1.359        
cufflinks 1.246        
cufflinks 1.105        
cufflinks 0.098       Low
cufflinks 1.397        
cufflinks 0.11       Low
cufflinks 0.017     Low Low
cufflinks 1.43        
cufflinks 1.18        
cufflinks 2.213        
cufflinks 3.99       High
cufflinks 1.073        
cufflinks 2.072        
cufflinks 2.233        
cufflinks 1.423        
cufflinks 1.539        
cufflinks 1.659        
cufflinks 1.361        
cufflinks 1.016        
cufflinks 0.171       Low
cufflinks 1.083        
cufflinks 1.536        
cufflinks 4.333       High

0 Strain