Gene : Bradi3g53290 B. distachyon v3.1
Defline:  (1 of 1) PTHR10210:SF34 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 4 Genomic Order:  6616
Name:  ? Bradi3g53290 Secondary Identifier:  ? PAC:32812959
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY0-662 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g53290 0.5kb upstream 0.5kb upstream 3005 true Bd3: 53770673-53773677 Brachypodium distachyon
Bradi3g53290 0.5kb upstream 0.5kb upstream 500 false Bd3: 53770673-53771172 Brachypodium distachyon
Bradi3g53290 0.5kb downstream 0.5kb downstream 3005 true Bd3: 53771173-53774177 Brachypodium distachyon
Bradi3g53290 0.5kb downstream 0.5kb downstream 500 false Bd3: 53773678-53774177 Brachypodium distachyon
Bradi3g53290 1.0kb upstream 1.0kb upstream 3505 true Bd3: 53770173-53773677 Brachypodium distachyon
Bradi3g53290 1.0kb upstream 1.0kb upstream 1000 false Bd3: 53770173-53771172 Brachypodium distachyon
Bradi3g53290 1.0kb downstream 1.0kb downstream 3505 true Bd3: 53771173-53774677 Brachypodium distachyon
Bradi3g53290 1.0kb downstream 1.0kb downstream 1000 false Bd3: 53773678-53774677 Brachypodium distachyon
Bradi3g53290 2.0kb upstream 2.0kb upstream 4505 true Bd3: 53769173-53773677 Brachypodium distachyon
Bradi3g53290 2.0kb upstream 2.0kb upstream 2000 false Bd3: 53769173-53771172 Brachypodium distachyon
Bradi3g53290 2.0kb downstream 2.0kb downstream 4505 true Bd3: 53771173-53775677 Brachypodium distachyon
Bradi3g53290 2.0kb downstream 2.0kb downstream 2000 false Bd3: 53773678-53775677 Brachypodium distachyon
Bradi3g53290 5.0kb upstream 5.0kb upstream 7505 true Bd3: 53766173-53773677 Brachypodium distachyon
Bradi3g53290 5.0kb upstream 5.0kb upstream 5000 false Bd3: 53766173-53771172 Brachypodium distachyon
Bradi3g53290 5.0kb downstream 5.0kb downstream 7505 true Bd3: 53771173-53778677 Brachypodium distachyon
Bradi3g53290 5.0kb downstream 5.0kb downstream 5000 false Bd3: 53773678-53778677 Brachypodium distachyon
Bradi3g53290 10.0kb upstream 10.0kb upstream 12505 true Bd3: 53761173-53773677 Brachypodium distachyon
Bradi3g53290 10.0kb upstream 10.0kb upstream 10000 false Bd3: 53761173-53771172 Brachypodium distachyon
Bradi3g53290 10.0kb downstream 10.0kb downstream 12505 true Bd3: 53771173-53783677 Brachypodium distachyon
Bradi3g53290 10.0kb downstream 10.0kb downstream 10000 false Bd3: 53773678-53783677 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573166 5269 Grass View MSA
122048410 5273 Angiosperm View MSA
121347977 5274 Embryophyte View MSA
123424356 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.738     High  
cufflinks 25.076     High  
cufflinks 20.937     High  
cufflinks 21.74     High  
cufflinks 19.596     High  
cufflinks 21.739     High  
cufflinks 29.2     High  
cufflinks 16.991     High  
cufflinks 19.176     High  
cufflinks 17.033     High  
cufflinks 17.254     High  
cufflinks 14.876     High  
cufflinks 12.875     High Low
cufflinks 14.107     High  
cufflinks 11.074     High Low
cufflinks 21.092     High  
cufflinks 25.866     High  
cufflinks 74.563     High High
cufflinks 29.787     High  
cufflinks 14.301     High  
cufflinks 27.814     High  
cufflinks 16.528     High  
cufflinks 14.217     High  
cufflinks 15.493     High  
cufflinks 21.772     High  
cufflinks 19.753     High  
cufflinks 20.163     High  
cufflinks 18.815     High  
cufflinks 16.701     High  
cufflinks 22.331     High  

0 Strain