Gene : Bradi3g53740 B. distachyon v3.1
Defline:  (1 of 1) PTHR22950//PTHR22950:SF269 - AMINO ACID TRANSPORTER // EXPRESSED PROTEIN Genomic Order:  6667
Name:  ? Bradi3g53740 Secondary Identifier:  ? PAC:32815909
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g53740 0.5kb upstream 0.5kb upstream 6561 true Bd3: 54097287-54103847 Brachypodium distachyon
Bradi3g53740 0.5kb upstream 0.5kb upstream 500 false Bd3: 54103348-54103847 Brachypodium distachyon
Bradi3g53740 0.5kb downstream 0.5kb downstream 6561 true Bd3: 54096787-54103347 Brachypodium distachyon
Bradi3g53740 0.5kb downstream 0.5kb downstream 500 false Bd3: 54096787-54097286 Brachypodium distachyon
Bradi3g53740 1.0kb upstream 1.0kb upstream 7061 true Bd3: 54097287-54104347 Brachypodium distachyon
Bradi3g53740 1.0kb upstream 1.0kb upstream 1000 false Bd3: 54103348-54104347 Brachypodium distachyon
Bradi3g53740 1.0kb downstream 1.0kb downstream 7061 true Bd3: 54096287-54103347 Brachypodium distachyon
Bradi3g53740 1.0kb downstream 1.0kb downstream 1000 false Bd3: 54096287-54097286 Brachypodium distachyon
Bradi3g53740 2.0kb upstream 2.0kb upstream 8061 true Bd3: 54097287-54105347 Brachypodium distachyon
Bradi3g53740 2.0kb upstream 2.0kb upstream 2000 false Bd3: 54103348-54105347 Brachypodium distachyon
Bradi3g53740 2.0kb downstream 2.0kb downstream 8061 true Bd3: 54095287-54103347 Brachypodium distachyon
Bradi3g53740 2.0kb downstream 2.0kb downstream 2000 false Bd3: 54095287-54097286 Brachypodium distachyon
Bradi3g53740 5.0kb upstream 5.0kb upstream 11061 true Bd3: 54097287-54108347 Brachypodium distachyon
Bradi3g53740 5.0kb upstream 5.0kb upstream 5000 false Bd3: 54103348-54108347 Brachypodium distachyon
Bradi3g53740 5.0kb downstream 5.0kb downstream 11061 true Bd3: 54092287-54103347 Brachypodium distachyon
Bradi3g53740 5.0kb downstream 5.0kb downstream 5000 false Bd3: 54092287-54097286 Brachypodium distachyon
Bradi3g53740 10.0kb upstream 10.0kb upstream 16061 true Bd3: 54097287-54113347 Brachypodium distachyon
Bradi3g53740 10.0kb upstream 10.0kb upstream 10000 false Bd3: 54103348-54113347 Brachypodium distachyon
Bradi3g53740 10.0kb downstream 10.0kb downstream 16061 true Bd3: 54087287-54103347 Brachypodium distachyon
Bradi3g53740 10.0kb downstream 10.0kb downstream 10000 false Bd3: 54087287-54097286 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578652 5269 Grass View MSA
122047534 5273 Angiosperm View MSA
123429000 5275 Viridiplantae View MSA
121351519 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.638        
cufflinks 6.256        
cufflinks 6.013        
cufflinks 5.891        
cufflinks 27.753     High High
cufflinks 6.729        
cufflinks 5.732        
cufflinks 8.059        
cufflinks 7.593        
cufflinks 7.637        
cufflinks 5.416        
cufflinks 9.201     High  
cufflinks 4.127       Low
cufflinks 4.917        
cufflinks 8.371        
cufflinks 6.78        
cufflinks 4.8        
cufflinks 10.148        
cufflinks 11.464        
cufflinks 76.898     High High
cufflinks 4.283        
cufflinks 8.736        
cufflinks 8.922        
cufflinks 7.453        
cufflinks 6.262        
cufflinks 5.925        
cufflinks 5.557        
cufflinks 6.016        
cufflinks 6.932        
cufflinks 6.501        

0 Strain