Gene : Bradi3g50240 B. distachyon v3.1
Defline:  (1 of 1) PTHR23076//PTHR23076:SF70 - METALLOPROTEASE M41 FTSH // ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 7, CHLOROPLASTIC-RELATED Genomic Order:  6236
Name:  ? Bradi3g50240 Secondary Identifier:  ? PAC:32813279
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g50240 0.5kb upstream 0.5kb upstream 6737 true Bd3: 51222951-51229687 Brachypodium distachyon
Bradi3g50240 0.5kb upstream 0.5kb upstream 500 false Bd3: 51222951-51223450 Brachypodium distachyon
Bradi3g50240 0.5kb downstream 0.5kb downstream 6737 true Bd3: 51223451-51230187 Brachypodium distachyon
Bradi3g50240 0.5kb downstream 0.5kb downstream 500 false Bd3: 51229688-51230187 Brachypodium distachyon
Bradi3g50240 1.0kb upstream 1.0kb upstream 7237 true Bd3: 51222451-51229687 Brachypodium distachyon
Bradi3g50240 1.0kb upstream 1.0kb upstream 1000 false Bd3: 51222451-51223450 Brachypodium distachyon
Bradi3g50240 1.0kb downstream 1.0kb downstream 7237 true Bd3: 51223451-51230687 Brachypodium distachyon
Bradi3g50240 1.0kb downstream 1.0kb downstream 1000 false Bd3: 51229688-51230687 Brachypodium distachyon
Bradi3g50240 2.0kb upstream 2.0kb upstream 8237 true Bd3: 51221451-51229687 Brachypodium distachyon
Bradi3g50240 2.0kb upstream 2.0kb upstream 2000 false Bd3: 51221451-51223450 Brachypodium distachyon
Bradi3g50240 2.0kb downstream 2.0kb downstream 8237 true Bd3: 51223451-51231687 Brachypodium distachyon
Bradi3g50240 2.0kb downstream 2.0kb downstream 2000 false Bd3: 51229688-51231687 Brachypodium distachyon
Bradi3g50240 5.0kb upstream 5.0kb upstream 11237 true Bd3: 51218451-51229687 Brachypodium distachyon
Bradi3g50240 5.0kb upstream 5.0kb upstream 5000 false Bd3: 51218451-51223450 Brachypodium distachyon
Bradi3g50240 5.0kb downstream 5.0kb downstream 11237 true Bd3: 51223451-51234687 Brachypodium distachyon
Bradi3g50240 5.0kb downstream 5.0kb downstream 5000 false Bd3: 51229688-51234687 Brachypodium distachyon
Bradi3g50240 10.0kb upstream 10.0kb upstream 16237 true Bd3: 51213451-51229687 Brachypodium distachyon
Bradi3g50240 10.0kb upstream 10.0kb upstream 10000 false Bd3: 51213451-51223450 Brachypodium distachyon
Bradi3g50240 10.0kb downstream 10.0kb downstream 16237 true Bd3: 51223451-51239687 Brachypodium distachyon
Bradi3g50240 10.0kb downstream 10.0kb downstream 10000 false Bd3: 51229688-51239687 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575251 5269 Grass View MSA
122042272 5273 Angiosperm View MSA
121349711 5274 Embryophyte View MSA
123424503 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.617     High  
cufflinks 19.719     High  
cufflinks 26.07     High  
cufflinks 16.043     High  
cufflinks 8.894     High Low
cufflinks 32.281     High  
cufflinks 24.731     High  
cufflinks 18.122     High  
cufflinks 28.053     High  
cufflinks 16.977     High  
cufflinks 63.901     High High
cufflinks 28.368     High  
cufflinks 48.48     High High
cufflinks 47.318     High High
cufflinks 18.666     High  
cufflinks 34.978     High  
cufflinks 14.584     High  
cufflinks 9.369       Low
cufflinks 7.088       Low
cufflinks 7.116       Low
cufflinks 11.234     High  
cufflinks 26.398     High  
cufflinks 17.051     High  
cufflinks 26.628     High  
cufflinks 23.932     High  
cufflinks 23.705     High  
cufflinks 52.845     High High
cufflinks 23.557     High  
cufflinks 22.089     High  
cufflinks 11.166        

0 Strain