Gene : Bradi3g50440 B. distachyon v3.1
Defline:  (1 of 1) 4.2.1.18 - Methylglutaconyl-CoA hydratase Genomic Order:  6264
Name:  ? Bradi3g50440 Secondary Identifier:  ? PAC:32814206
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon LEU-DEG2-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g50440 0.5kb upstream 0.5kb upstream 4588 true Bd3: 51413076-51417663 Brachypodium distachyon
Bradi3g50440 0.5kb upstream 0.5kb upstream 500 false Bd3: 51413076-51413575 Brachypodium distachyon
Bradi3g50440 0.5kb downstream 0.5kb downstream 4588 true Bd3: 51413576-51418163 Brachypodium distachyon
Bradi3g50440 0.5kb downstream 0.5kb downstream 500 false Bd3: 51417664-51418163 Brachypodium distachyon
Bradi3g50440 1.0kb upstream 1.0kb upstream 5088 true Bd3: 51412576-51417663 Brachypodium distachyon
Bradi3g50440 1.0kb upstream 1.0kb upstream 1000 false Bd3: 51412576-51413575 Brachypodium distachyon
Bradi3g50440 1.0kb downstream 1.0kb downstream 5088 true Bd3: 51413576-51418663 Brachypodium distachyon
Bradi3g50440 1.0kb downstream 1.0kb downstream 1000 false Bd3: 51417664-51418663 Brachypodium distachyon
Bradi3g50440 2.0kb upstream 2.0kb upstream 6088 true Bd3: 51411576-51417663 Brachypodium distachyon
Bradi3g50440 2.0kb upstream 2.0kb upstream 2000 false Bd3: 51411576-51413575 Brachypodium distachyon
Bradi3g50440 2.0kb downstream 2.0kb downstream 6088 true Bd3: 51413576-51419663 Brachypodium distachyon
Bradi3g50440 2.0kb downstream 2.0kb downstream 2000 false Bd3: 51417664-51419663 Brachypodium distachyon
Bradi3g50440 5.0kb upstream 5.0kb upstream 9088 true Bd3: 51408576-51417663 Brachypodium distachyon
Bradi3g50440 5.0kb upstream 5.0kb upstream 5000 false Bd3: 51408576-51413575 Brachypodium distachyon
Bradi3g50440 5.0kb downstream 5.0kb downstream 9088 true Bd3: 51413576-51422663 Brachypodium distachyon
Bradi3g50440 5.0kb downstream 5.0kb downstream 5000 false Bd3: 51417664-51422663 Brachypodium distachyon
Bradi3g50440 10.0kb upstream 10.0kb upstream 14088 true Bd3: 51403576-51417663 Brachypodium distachyon
Bradi3g50440 10.0kb upstream 10.0kb upstream 10000 false Bd3: 51403576-51413575 Brachypodium distachyon
Bradi3g50440 10.0kb downstream 10.0kb downstream 14088 true Bd3: 51413576-51427663 Brachypodium distachyon
Bradi3g50440 10.0kb downstream 10.0kb downstream 10000 false Bd3: 51417664-51427663 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579335 5269 Grass View MSA
122045797 5273 Angiosperm View MSA
121351751 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.691        
cufflinks 2.988        
cufflinks 3.016        
cufflinks 3.624        
cufflinks 3.539        
cufflinks 2.296        
cufflinks 2.641        
cufflinks 2.099        
cufflinks 2.547        
cufflinks 3.71        
cufflinks 2.174        
cufflinks 2.099        
cufflinks 1.405       Low
cufflinks 1.506       Low
cufflinks 2.393        
cufflinks 2.196        
cufflinks 3.777        
cufflinks 2.597        
cufflinks 8.36       High
cufflinks 17.66     High High
cufflinks 5.81       High
cufflinks 2.641        
cufflinks 2.413        
cufflinks 2.239        
cufflinks 2.79        
cufflinks 4.173        
cufflinks 1.993        
cufflinks 3.792        
cufflinks 3.712        
cufflinks 3.651        

0 Strain