Gene : Bradi3g50590 B. distachyon v3.1
Defline:  (1 of 1) K04715 - ceramide kinase (E2.7.1.138, CERK) Genomic Order:  6280
Name:  ? Bradi3g50590 Secondary Identifier:  ? PAC:32817013
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5129 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g50590 0.5kb upstream 0.5kb upstream 6260 true Bd3: 51496840-51503099 Brachypodium distachyon
Bradi3g50590 0.5kb upstream 0.5kb upstream 500 false Bd3: 51502600-51503099 Brachypodium distachyon
Bradi3g50590 0.5kb downstream 0.5kb downstream 6260 true Bd3: 51496340-51502599 Brachypodium distachyon
Bradi3g50590 0.5kb downstream 0.5kb downstream 500 false Bd3: 51496340-51496839 Brachypodium distachyon
Bradi3g50590 1.0kb upstream 1.0kb upstream 6760 true Bd3: 51496840-51503599 Brachypodium distachyon
Bradi3g50590 1.0kb upstream 1.0kb upstream 1000 false Bd3: 51502600-51503599 Brachypodium distachyon
Bradi3g50590 1.0kb downstream 1.0kb downstream 6760 true Bd3: 51495840-51502599 Brachypodium distachyon
Bradi3g50590 1.0kb downstream 1.0kb downstream 1000 false Bd3: 51495840-51496839 Brachypodium distachyon
Bradi3g50590 2.0kb upstream 2.0kb upstream 7760 true Bd3: 51496840-51504599 Brachypodium distachyon
Bradi3g50590 2.0kb upstream 2.0kb upstream 2000 false Bd3: 51502600-51504599 Brachypodium distachyon
Bradi3g50590 2.0kb downstream 2.0kb downstream 7760 true Bd3: 51494840-51502599 Brachypodium distachyon
Bradi3g50590 2.0kb downstream 2.0kb downstream 2000 false Bd3: 51494840-51496839 Brachypodium distachyon
Bradi3g50590 5.0kb upstream 5.0kb upstream 10760 true Bd3: 51496840-51507599 Brachypodium distachyon
Bradi3g50590 5.0kb upstream 5.0kb upstream 5000 false Bd3: 51502600-51507599 Brachypodium distachyon
Bradi3g50590 5.0kb downstream 5.0kb downstream 10760 true Bd3: 51491840-51502599 Brachypodium distachyon
Bradi3g50590 5.0kb downstream 5.0kb downstream 5000 false Bd3: 51491840-51496839 Brachypodium distachyon
Bradi3g50590 10.0kb upstream 10.0kb upstream 15760 true Bd3: 51496840-51512599 Brachypodium distachyon
Bradi3g50590 10.0kb upstream 10.0kb upstream 10000 false Bd3: 51502600-51512599 Brachypodium distachyon
Bradi3g50590 10.0kb downstream 10.0kb downstream 15760 true Bd3: 51486840-51502599 Brachypodium distachyon
Bradi3g50590 10.0kb downstream 10.0kb downstream 10000 false Bd3: 51486840-51496839 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580851 5269 Grass View MSA
122045057 5273 Angiosperm View MSA
121345163 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.989        
cufflinks 1.03        
cufflinks 1.347       High
cufflinks 0.984        
cufflinks 0.524       Low
cufflinks 0.963        
cufflinks 0.951        
cufflinks 1.018        
cufflinks 1.065        
cufflinks 0.998        
cufflinks 0.924        
cufflinks 0.955        
cufflinks 0.856        
cufflinks 0.613        
cufflinks 0.877        
cufflinks 0.902        
cufflinks 0.802        
cufflinks 1.229        
cufflinks 1.281        
cufflinks 0.195       Low
cufflinks 1.002        
cufflinks 1.461       High
cufflinks 1.072        
cufflinks 0.921        
cufflinks 0.877        
cufflinks 1.278        
cufflinks 1.016        
cufflinks 1.339       High
cufflinks 1.435       High
cufflinks 1.038        

0 Strain