Gene : Bradi3g51245 B. distachyon v3.1
Defline:  (1 of 1) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  6363
Name:  ? Bradi3g51245 Secondary Identifier:  ? PAC:32817167
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5120 Brachypodium distachyon pathologic  
Bdistachyon PWY-5910 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g51245 0.5kb upstream 0.5kb upstream 1541 true Bd3: 52103064-52104604 Brachypodium distachyon
Bradi3g51245 0.5kb upstream 0.5kb upstream 500 false Bd3: 52103064-52103563 Brachypodium distachyon
Bradi3g51245 0.5kb downstream 0.5kb downstream 1541 true Bd3: 52103564-52105104 Brachypodium distachyon
Bradi3g51245 0.5kb downstream 0.5kb downstream 500 false Bd3: 52104605-52105104 Brachypodium distachyon
Bradi3g51245 1.0kb upstream 1.0kb upstream 2041 true Bd3: 52102564-52104604 Brachypodium distachyon
Bradi3g51245 1.0kb upstream 1.0kb upstream 1000 false Bd3: 52102564-52103563 Brachypodium distachyon
Bradi3g51245 1.0kb downstream 1.0kb downstream 2041 true Bd3: 52103564-52105604 Brachypodium distachyon
Bradi3g51245 1.0kb downstream 1.0kb downstream 1000 false Bd3: 52104605-52105604 Brachypodium distachyon
Bradi3g51245 2.0kb upstream 2.0kb upstream 3041 true Bd3: 52101564-52104604 Brachypodium distachyon
Bradi3g51245 2.0kb upstream 2.0kb upstream 2000 false Bd3: 52101564-52103563 Brachypodium distachyon
Bradi3g51245 2.0kb downstream 2.0kb downstream 3041 true Bd3: 52103564-52106604 Brachypodium distachyon
Bradi3g51245 2.0kb downstream 2.0kb downstream 2000 false Bd3: 52104605-52106604 Brachypodium distachyon
Bradi3g51245 5.0kb upstream 5.0kb upstream 6041 true Bd3: 52098564-52104604 Brachypodium distachyon
Bradi3g51245 5.0kb upstream 5.0kb upstream 5000 false Bd3: 52098564-52103563 Brachypodium distachyon
Bradi3g51245 5.0kb downstream 5.0kb downstream 6041 true Bd3: 52103564-52109604 Brachypodium distachyon
Bradi3g51245 5.0kb downstream 5.0kb downstream 5000 false Bd3: 52104605-52109604 Brachypodium distachyon
Bradi3g51245 10.0kb upstream 10.0kb upstream 11041 true Bd3: 52093564-52104604 Brachypodium distachyon
Bradi3g51245 10.0kb upstream 10.0kb upstream 10000 false Bd3: 52093564-52103563 Brachypodium distachyon
Bradi3g51245 10.0kb downstream 10.0kb downstream 11041 true Bd3: 52103564-52114604 Brachypodium distachyon
Bradi3g51245 10.0kb downstream 10.0kb downstream 10000 false Bd3: 52104605-52114604 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576074 5269 Grass View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.858       Low
cufflinks 11.471     High  
cufflinks 9.061        
cufflinks 11.709     High  
cufflinks 8.354        
cufflinks 8.456        
cufflinks 14.697     High High
cufflinks 9.116        
cufflinks 10.361     High  
cufflinks 7.361        
cufflinks 12.712     High  
cufflinks 5.137       Low
cufflinks 9.151     High  
cufflinks 11.171     High  
cufflinks 3.629       Low
cufflinks 9.194        
cufflinks 13.223     High  
cufflinks 2.691       Low
cufflinks 16.788     High High
cufflinks 7.828        
cufflinks 20.314     High High
cufflinks 7.879        
cufflinks 12.789     High  
cufflinks 10.552     High  
cufflinks 13.215     High  
cufflinks 7.384        
cufflinks 8.877     High  
cufflinks 11.36     High  
cufflinks 10.378        
cufflinks 10.804        

0 Strain