Gene : Bradi3g51750 B. distachyon v3.1
Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  6427
Name:  ? Bradi3g51750 Secondary Identifier:  ? PAC:32812980
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7560 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g51750 0.5kb upstream 0.5kb upstream 2587 true Bd3: 52530818-52533404 Brachypodium distachyon
Bradi3g51750 0.5kb upstream 0.5kb upstream 500 false Bd3: 52532905-52533404 Brachypodium distachyon
Bradi3g51750 0.5kb downstream 0.5kb downstream 2587 true Bd3: 52530318-52532904 Brachypodium distachyon
Bradi3g51750 0.5kb downstream 0.5kb downstream 500 false Bd3: 52530318-52530817 Brachypodium distachyon
Bradi3g51750 1.0kb upstream 1.0kb upstream 3087 true Bd3: 52530818-52533904 Brachypodium distachyon
Bradi3g51750 1.0kb upstream 1.0kb upstream 1000 false Bd3: 52532905-52533904 Brachypodium distachyon
Bradi3g51750 1.0kb downstream 1.0kb downstream 3087 true Bd3: 52529818-52532904 Brachypodium distachyon
Bradi3g51750 1.0kb downstream 1.0kb downstream 1000 false Bd3: 52529818-52530817 Brachypodium distachyon
Bradi3g51750 2.0kb upstream 2.0kb upstream 4087 true Bd3: 52530818-52534904 Brachypodium distachyon
Bradi3g51750 2.0kb upstream 2.0kb upstream 2000 false Bd3: 52532905-52534904 Brachypodium distachyon
Bradi3g51750 2.0kb downstream 2.0kb downstream 4087 true Bd3: 52528818-52532904 Brachypodium distachyon
Bradi3g51750 2.0kb downstream 2.0kb downstream 2000 false Bd3: 52528818-52530817 Brachypodium distachyon
Bradi3g51750 5.0kb upstream 5.0kb upstream 7087 true Bd3: 52530818-52537904 Brachypodium distachyon
Bradi3g51750 5.0kb upstream 5.0kb upstream 5000 false Bd3: 52532905-52537904 Brachypodium distachyon
Bradi3g51750 5.0kb downstream 5.0kb downstream 7087 true Bd3: 52525818-52532904 Brachypodium distachyon
Bradi3g51750 5.0kb downstream 5.0kb downstream 5000 false Bd3: 52525818-52530817 Brachypodium distachyon
Bradi3g51750 10.0kb upstream 10.0kb upstream 12087 true Bd3: 52530818-52542904 Brachypodium distachyon
Bradi3g51750 10.0kb upstream 10.0kb upstream 10000 false Bd3: 52532905-52542904 Brachypodium distachyon
Bradi3g51750 10.0kb downstream 10.0kb downstream 12087 true Bd3: 52520818-52532904 Brachypodium distachyon
Bradi3g51750 10.0kb downstream 10.0kb downstream 10000 false Bd3: 52520818-52530817 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578678 5269 Grass View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.248     High  
cufflinks 26.631     High  
cufflinks 19.196     High  
cufflinks 32.822     High  
cufflinks 26.19     High  
cufflinks 27.333     High  
cufflinks 29.686     High  
cufflinks 24.766     High  
cufflinks 27.539     High  
cufflinks 28.838     High  
cufflinks 45.816     High High
cufflinks 20.676     High  
cufflinks 32.033     High  
cufflinks 48.86     High High
cufflinks 23.3     High  
cufflinks 29.404     High  
cufflinks 42.422     High  
cufflinks 4.583       Low
cufflinks 32.16     High  
cufflinks 36.111     High  
cufflinks 26.136     High  
cufflinks 17.203     High  
cufflinks 26.014     High  
cufflinks 31.76     High  
cufflinks 36.419     High  
cufflinks 20.213     High  
cufflinks 38.501     High  
cufflinks 24.19     High  
cufflinks 24.935     High  
cufflinks 15.264     High  

0 Strain