Gene : Bradi3g52102 B. distachyon v3.1
Defline:  (1 of 1) PTHR35282:SF2 - F5D14.24 PROTEIN Genomic Order:  6473
Name:  ? Bradi3g52102 Secondary Identifier:  ? PAC:32816642
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g52102 0.5kb upstream 0.5kb upstream 2189 true Bd3: 52853628-52855816 Brachypodium distachyon
Bradi3g52102 0.5kb upstream 0.5kb upstream 500 false Bd3: 52853628-52854127 Brachypodium distachyon
Bradi3g52102 0.5kb downstream 0.5kb downstream 2189 true Bd3: 52854128-52856316 Brachypodium distachyon
Bradi3g52102 0.5kb downstream 0.5kb downstream 500 false Bd3: 52855817-52856316 Brachypodium distachyon
Bradi3g52102 1.0kb upstream 1.0kb upstream 2689 true Bd3: 52853128-52855816 Brachypodium distachyon
Bradi3g52102 1.0kb upstream 1.0kb upstream 1000 false Bd3: 52853128-52854127 Brachypodium distachyon
Bradi3g52102 1.0kb downstream 1.0kb downstream 2689 true Bd3: 52854128-52856816 Brachypodium distachyon
Bradi3g52102 1.0kb downstream 1.0kb downstream 1000 false Bd3: 52855817-52856816 Brachypodium distachyon
Bradi3g52102 2.0kb upstream 2.0kb upstream 3689 true Bd3: 52852128-52855816 Brachypodium distachyon
Bradi3g52102 2.0kb upstream 2.0kb upstream 2000 false Bd3: 52852128-52854127 Brachypodium distachyon
Bradi3g52102 2.0kb downstream 2.0kb downstream 3689 true Bd3: 52854128-52857816 Brachypodium distachyon
Bradi3g52102 2.0kb downstream 2.0kb downstream 2000 false Bd3: 52855817-52857816 Brachypodium distachyon
Bradi3g52102 5.0kb upstream 5.0kb upstream 6689 true Bd3: 52849128-52855816 Brachypodium distachyon
Bradi3g52102 5.0kb upstream 5.0kb upstream 5000 false Bd3: 52849128-52854127 Brachypodium distachyon
Bradi3g52102 5.0kb downstream 5.0kb downstream 6689 true Bd3: 52854128-52860816 Brachypodium distachyon
Bradi3g52102 5.0kb downstream 5.0kb downstream 5000 false Bd3: 52855817-52860816 Brachypodium distachyon
Bradi3g52102 10.0kb upstream 10.0kb upstream 11689 true Bd3: 52844128-52855816 Brachypodium distachyon
Bradi3g52102 10.0kb upstream 10.0kb upstream 10000 false Bd3: 52844128-52854127 Brachypodium distachyon
Bradi3g52102 10.0kb downstream 10.0kb downstream 11689 true Bd3: 52854128-52865816 Brachypodium distachyon
Bradi3g52102 10.0kb downstream 10.0kb downstream 10000 false Bd3: 52855817-52865816 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028162 5273 Angiosperm View MSA
124589577 5269 Grass View MSA
121297693 5274 Embryophyte View MSA
123335723 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.778        
cufflinks 3.824       Low
cufflinks 3.529       Low
cufflinks 3.986       Low
cufflinks 17.989     High High
cufflinks 6.326        
cufflinks 4.913        
cufflinks 10.309     High  
cufflinks 7.505        
cufflinks 7.421        
cufflinks 8.329        
cufflinks 7.838        
cufflinks 7.846     High  
cufflinks 8.96     High  
cufflinks 10.753     High  
cufflinks 4.091       Low
cufflinks 11.252     High  
cufflinks 12.133     High  
cufflinks 5.871        
cufflinks 9.654        
cufflinks 14.939     High High
cufflinks 5.44        
cufflinks 7.616        
cufflinks 8.89        
cufflinks 4.474        
cufflinks 3.246       Low
cufflinks 10.244     High  
cufflinks 3.642       Low
cufflinks 4.728        
cufflinks 4.5        

0 Strain