Gene : Bradi3g58172 B. distachyon v3.1
Defline:  (1 of 1) PTHR12786:SF2 - SPLICING FACTOR 3A SUBUNIT 3 Genomic Order:  7233
Name:  ? Bradi3g58172 Secondary Identifier:  ? PAC:32820261
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g58172 0.5kb upstream 0.5kb upstream 8620 true Bd3: 57468950-57477569 Brachypodium distachyon
Bradi3g58172 0.5kb upstream 0.5kb upstream 500 false Bd3: 57477070-57477569 Brachypodium distachyon
Bradi3g58172 0.5kb downstream 0.5kb downstream 8620 true Bd3: 57468450-57477069 Brachypodium distachyon
Bradi3g58172 0.5kb downstream 0.5kb downstream 500 false Bd3: 57468450-57468949 Brachypodium distachyon
Bradi3g58172 1.0kb upstream 1.0kb upstream 9120 true Bd3: 57468950-57478069 Brachypodium distachyon
Bradi3g58172 1.0kb upstream 1.0kb upstream 1000 false Bd3: 57477070-57478069 Brachypodium distachyon
Bradi3g58172 1.0kb downstream 1.0kb downstream 9120 true Bd3: 57467950-57477069 Brachypodium distachyon
Bradi3g58172 1.0kb downstream 1.0kb downstream 1000 false Bd3: 57467950-57468949 Brachypodium distachyon
Bradi3g58172 2.0kb upstream 2.0kb upstream 10120 true Bd3: 57468950-57479069 Brachypodium distachyon
Bradi3g58172 2.0kb upstream 2.0kb upstream 2000 false Bd3: 57477070-57479069 Brachypodium distachyon
Bradi3g58172 2.0kb downstream 2.0kb downstream 10120 true Bd3: 57466950-57477069 Brachypodium distachyon
Bradi3g58172 2.0kb downstream 2.0kb downstream 2000 false Bd3: 57466950-57468949 Brachypodium distachyon
Bradi3g58172 5.0kb upstream 5.0kb upstream 13120 true Bd3: 57468950-57482069 Brachypodium distachyon
Bradi3g58172 5.0kb upstream 5.0kb upstream 5000 false Bd3: 57477070-57482069 Brachypodium distachyon
Bradi3g58172 5.0kb downstream 5.0kb downstream 13120 true Bd3: 57463950-57477069 Brachypodium distachyon
Bradi3g58172 5.0kb downstream 5.0kb downstream 5000 false Bd3: 57463950-57468949 Brachypodium distachyon
Bradi3g58172 10.0kb upstream 10.0kb upstream 18120 true Bd3: 57468950-57487069 Brachypodium distachyon
Bradi3g58172 10.0kb upstream 10.0kb upstream 10000 false Bd3: 57477070-57487069 Brachypodium distachyon
Bradi3g58172 10.0kb downstream 10.0kb downstream 18120 true Bd3: 57458950-57477069 Brachypodium distachyon
Bradi3g58172 10.0kb downstream 10.0kb downstream 10000 false Bd3: 57458950-57468949 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572098 5269 Grass View MSA
122042756 5273 Angiosperm View MSA
123429134 5275 Viridiplantae View MSA
121345552 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.245        
cufflinks 6.779        
cufflinks 7.478        
cufflinks 7.418        
cufflinks 5.255        
cufflinks 6.221        
cufflinks 6.122        
cufflinks 5.549        
cufflinks 5.848        
cufflinks 7.291        
cufflinks 5.017        
cufflinks 5.317        
cufflinks 3.86       Low
cufflinks 3.785       Low
cufflinks 3.991       Low
cufflinks 5.659        
cufflinks 6.472        
cufflinks 8.809       High
cufflinks 5.924        
cufflinks 5.594        
cufflinks 5.658        
cufflinks 7.56        
cufflinks 5.673        
cufflinks 5.623        
cufflinks 6.9        
cufflinks 8.118       High
cufflinks 4.574       Low
cufflinks 7.679        
cufflinks 6.982        
cufflinks 6.189        

0 Strain