Gene : Bradi3g58990 B. distachyon v3.1
Defline:  (1 of 1) PTHR30007//PTHR30007:SF24 - PHP DOMAIN PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  7307
Name:  ? Bradi3g58990 Secondary Identifier:  ? PAC:32818638
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g58990 0.5kb upstream 0.5kb upstream 3013 true Bd3: 58046654-58049666 Brachypodium distachyon
Bradi3g58990 0.5kb upstream 0.5kb upstream 500 false Bd3: 58049167-58049666 Brachypodium distachyon
Bradi3g58990 0.5kb downstream 0.5kb downstream 3013 true Bd3: 58046154-58049166 Brachypodium distachyon
Bradi3g58990 0.5kb downstream 0.5kb downstream 500 false Bd3: 58046154-58046653 Brachypodium distachyon
Bradi3g58990 1.0kb upstream 1.0kb upstream 3513 true Bd3: 58046654-58050166 Brachypodium distachyon
Bradi3g58990 1.0kb upstream 1.0kb upstream 1000 false Bd3: 58049167-58050166 Brachypodium distachyon
Bradi3g58990 1.0kb downstream 1.0kb downstream 3513 true Bd3: 58045654-58049166 Brachypodium distachyon
Bradi3g58990 1.0kb downstream 1.0kb downstream 1000 false Bd3: 58045654-58046653 Brachypodium distachyon
Bradi3g58990 2.0kb upstream 2.0kb upstream 4513 true Bd3: 58046654-58051166 Brachypodium distachyon
Bradi3g58990 2.0kb upstream 2.0kb upstream 2000 false Bd3: 58049167-58051166 Brachypodium distachyon
Bradi3g58990 2.0kb downstream 2.0kb downstream 4513 true Bd3: 58044654-58049166 Brachypodium distachyon
Bradi3g58990 2.0kb downstream 2.0kb downstream 2000 false Bd3: 58044654-58046653 Brachypodium distachyon
Bradi3g58990 5.0kb upstream 5.0kb upstream 7513 true Bd3: 58046654-58054166 Brachypodium distachyon
Bradi3g58990 5.0kb upstream 5.0kb upstream 5000 false Bd3: 58049167-58054166 Brachypodium distachyon
Bradi3g58990 5.0kb downstream 5.0kb downstream 7513 true Bd3: 58041654-58049166 Brachypodium distachyon
Bradi3g58990 5.0kb downstream 5.0kb downstream 5000 false Bd3: 58041654-58046653 Brachypodium distachyon
Bradi3g58990 10.0kb upstream 10.0kb upstream 12513 true Bd3: 58046654-58059166 Brachypodium distachyon
Bradi3g58990 10.0kb upstream 10.0kb upstream 10000 false Bd3: 58049167-58059166 Brachypodium distachyon
Bradi3g58990 10.0kb downstream 10.0kb downstream 12513 true Bd3: 58036654-58049166 Brachypodium distachyon
Bradi3g58990 10.0kb downstream 10.0kb downstream 10000 false Bd3: 58036654-58046653 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122005822 5273 Angiosperm View MSA
124575410 5269 Grass View MSA
121350433 5274 Embryophyte View MSA
123381728 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.386        
cufflinks 0.67        
cufflinks 0.409        
cufflinks 0.913       High
cufflinks 0.516        
cufflinks 0.621        
cufflinks 0.523        
cufflinks 0.501        
cufflinks 0.682        
cufflinks 0.478        
cufflinks 0.041     Low Low
cufflinks 0.304        
cufflinks 0.087       Low
cufflinks 0.103       Low
cufflinks 0.252        
cufflinks 0.412        
cufflinks 0.197        
cufflinks 0.445        
cufflinks 0.442        
cufflinks 0.129     Low Low
cufflinks 0.503        
cufflinks 0.477        
cufflinks 0.553        
cufflinks 0.664        
cufflinks 0.796       High
cufflinks 0.476        
cufflinks 0.093       Low
cufflinks 0.525        
cufflinks 0.561        
cufflinks 0.4        

0 Strain