Gene : Bradi3g54840 B. distachyon v3.1
Defline:  (1 of 1) PTHR22957//PTHR22957:SF206 - TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  6817
Name:  ? Bradi3g54840 Secondary Identifier:  ? PAC:32813145
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g54840 0.5kb upstream 0.5kb upstream 4717 true Bd3: 55013528-55018244 Brachypodium distachyon
Bradi3g54840 0.5kb upstream 0.5kb upstream 500 false Bd3: 55017745-55018244 Brachypodium distachyon
Bradi3g54840 0.5kb downstream 0.5kb downstream 4717 true Bd3: 55013028-55017744 Brachypodium distachyon
Bradi3g54840 0.5kb downstream 0.5kb downstream 500 false Bd3: 55013028-55013527 Brachypodium distachyon
Bradi3g54840 1.0kb upstream 1.0kb upstream 5217 true Bd3: 55013528-55018744 Brachypodium distachyon
Bradi3g54840 1.0kb upstream 1.0kb upstream 1000 false Bd3: 55017745-55018744 Brachypodium distachyon
Bradi3g54840 1.0kb downstream 1.0kb downstream 5217 true Bd3: 55012528-55017744 Brachypodium distachyon
Bradi3g54840 1.0kb downstream 1.0kb downstream 1000 false Bd3: 55012528-55013527 Brachypodium distachyon
Bradi3g54840 2.0kb upstream 2.0kb upstream 6217 true Bd3: 55013528-55019744 Brachypodium distachyon
Bradi3g54840 2.0kb upstream 2.0kb upstream 2000 false Bd3: 55017745-55019744 Brachypodium distachyon
Bradi3g54840 2.0kb downstream 2.0kb downstream 6217 true Bd3: 55011528-55017744 Brachypodium distachyon
Bradi3g54840 2.0kb downstream 2.0kb downstream 2000 false Bd3: 55011528-55013527 Brachypodium distachyon
Bradi3g54840 5.0kb upstream 5.0kb upstream 9217 true Bd3: 55013528-55022744 Brachypodium distachyon
Bradi3g54840 5.0kb upstream 5.0kb upstream 5000 false Bd3: 55017745-55022744 Brachypodium distachyon
Bradi3g54840 5.0kb downstream 5.0kb downstream 9217 true Bd3: 55008528-55017744 Brachypodium distachyon
Bradi3g54840 5.0kb downstream 5.0kb downstream 5000 false Bd3: 55008528-55013527 Brachypodium distachyon
Bradi3g54840 10.0kb upstream 10.0kb upstream 14217 true Bd3: 55013528-55027744 Brachypodium distachyon
Bradi3g54840 10.0kb upstream 10.0kb upstream 10000 false Bd3: 55017745-55027744 Brachypodium distachyon
Bradi3g54840 10.0kb downstream 10.0kb downstream 14217 true Bd3: 55003528-55017744 Brachypodium distachyon
Bradi3g54840 10.0kb downstream 10.0kb downstream 10000 false Bd3: 55003528-55013527 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572290 5269 Grass View MSA
122051014 5273 Angiosperm View MSA
121350403 5274 Embryophyte View MSA
123428253 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.604        
cufflinks 1.493        
cufflinks 1.385        
cufflinks 1.531        
cufflinks 5.073       High
cufflinks 1.223        
cufflinks 1.28        
cufflinks 1.182        
cufflinks 1.267        
cufflinks 1.099        
cufflinks 1.589        
cufflinks 1.276        
cufflinks 0.802       Low
cufflinks 0.851       Low
cufflinks 1.387        
cufflinks 1.365        
cufflinks 1.657        
cufflinks 3.19       High
cufflinks 1.343        
cufflinks 1.865        
cufflinks 1.344        
cufflinks 1.364        
cufflinks 1.165        
cufflinks 1.226        
cufflinks 1.186        
cufflinks 1.669        
cufflinks 0.651       Low
cufflinks 1.528        
cufflinks 1.302        
cufflinks 1.404        

0 Strain