Gene : Bradi3g55060 B. distachyon v3.1
Defline:  (1 of 1) PTHR22847//PTHR22847:SF473 - WD40 REPEAT PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  6846
Name:  ? Bradi3g55060 Secondary Identifier:  ? PAC:32816570
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g55060 0.5kb upstream 0.5kb upstream 9858 true Bd3: 55176953-55186810 Brachypodium distachyon
Bradi3g55060 0.5kb upstream 0.5kb upstream 500 false Bd3: 55186311-55186810 Brachypodium distachyon
Bradi3g55060 0.5kb downstream 0.5kb downstream 9858 true Bd3: 55176453-55186310 Brachypodium distachyon
Bradi3g55060 0.5kb downstream 0.5kb downstream 500 false Bd3: 55176453-55176952 Brachypodium distachyon
Bradi3g55060 1.0kb upstream 1.0kb upstream 10358 true Bd3: 55176953-55187310 Brachypodium distachyon
Bradi3g55060 1.0kb upstream 1.0kb upstream 1000 false Bd3: 55186311-55187310 Brachypodium distachyon
Bradi3g55060 1.0kb downstream 1.0kb downstream 10358 true Bd3: 55175953-55186310 Brachypodium distachyon
Bradi3g55060 1.0kb downstream 1.0kb downstream 1000 false Bd3: 55175953-55176952 Brachypodium distachyon
Bradi3g55060 2.0kb upstream 2.0kb upstream 11358 true Bd3: 55176953-55188310 Brachypodium distachyon
Bradi3g55060 2.0kb upstream 2.0kb upstream 2000 false Bd3: 55186311-55188310 Brachypodium distachyon
Bradi3g55060 2.0kb downstream 2.0kb downstream 11358 true Bd3: 55174953-55186310 Brachypodium distachyon
Bradi3g55060 2.0kb downstream 2.0kb downstream 2000 false Bd3: 55174953-55176952 Brachypodium distachyon
Bradi3g55060 5.0kb upstream 5.0kb upstream 14358 true Bd3: 55176953-55191310 Brachypodium distachyon
Bradi3g55060 5.0kb upstream 5.0kb upstream 5000 false Bd3: 55186311-55191310 Brachypodium distachyon
Bradi3g55060 5.0kb downstream 5.0kb downstream 14358 true Bd3: 55171953-55186310 Brachypodium distachyon
Bradi3g55060 5.0kb downstream 5.0kb downstream 5000 false Bd3: 55171953-55176952 Brachypodium distachyon
Bradi3g55060 10.0kb upstream 10.0kb upstream 19358 true Bd3: 55176953-55196310 Brachypodium distachyon
Bradi3g55060 10.0kb upstream 10.0kb upstream 10000 false Bd3: 55186311-55196310 Brachypodium distachyon
Bradi3g55060 10.0kb downstream 10.0kb downstream 19358 true Bd3: 55166953-55186310 Brachypodium distachyon
Bradi3g55060 10.0kb downstream 10.0kb downstream 10000 false Bd3: 55166953-55176952 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580503 5269 Grass View MSA
122046787 5273 Angiosperm View MSA
123429146 5275 Viridiplantae View MSA
121350041 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.031        
cufflinks 12.213     High High
cufflinks 12.36     High High
cufflinks 10.249        
cufflinks 6.238        
cufflinks 11.16     High  
cufflinks 9.835     High  
cufflinks 10.633     High  
cufflinks 10.353     High  
cufflinks 7.462        
cufflinks 8.164        
cufflinks 13.118     High High
cufflinks 7.137        
cufflinks 5.801        
cufflinks 6.884        
cufflinks 11.715     High  
cufflinks 6.715        
cufflinks 10.941        
cufflinks 7.58        
cufflinks 3.447       Low
cufflinks 8.093        
cufflinks 11.685     High  
cufflinks 9.587     High  
cufflinks 9.56     High  
cufflinks 8.962        
cufflinks 10.794        
cufflinks 7.408        
cufflinks 9.708        
cufflinks 10.014        
cufflinks 12.652     High High

0 Strain