Gene : Bradi3g55560 B. distachyon v3.1
Defline:  (1 of 1) PTHR12419//PTHR12419:SF23 - OTU DOMAIN CONTAINING PROTEIN Genomic Order:  6907
Name:  ? Bradi3g55560 Secondary Identifier:  ? PAC:32812055
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g55560 0.5kb upstream 0.5kb upstream 6202 true Bd3: 55533831-55540032 Brachypodium distachyon
Bradi3g55560 0.5kb upstream 0.5kb upstream 500 false Bd3: 55539533-55540032 Brachypodium distachyon
Bradi3g55560 0.5kb downstream 0.5kb downstream 6202 true Bd3: 55533331-55539532 Brachypodium distachyon
Bradi3g55560 0.5kb downstream 0.5kb downstream 500 false Bd3: 55533331-55533830 Brachypodium distachyon
Bradi3g55560 1.0kb upstream 1.0kb upstream 6702 true Bd3: 55533831-55540532 Brachypodium distachyon
Bradi3g55560 1.0kb upstream 1.0kb upstream 1000 false Bd3: 55539533-55540532 Brachypodium distachyon
Bradi3g55560 1.0kb downstream 1.0kb downstream 6702 true Bd3: 55532831-55539532 Brachypodium distachyon
Bradi3g55560 1.0kb downstream 1.0kb downstream 1000 false Bd3: 55532831-55533830 Brachypodium distachyon
Bradi3g55560 2.0kb upstream 2.0kb upstream 7702 true Bd3: 55533831-55541532 Brachypodium distachyon
Bradi3g55560 2.0kb upstream 2.0kb upstream 2000 false Bd3: 55539533-55541532 Brachypodium distachyon
Bradi3g55560 2.0kb downstream 2.0kb downstream 7702 true Bd3: 55531831-55539532 Brachypodium distachyon
Bradi3g55560 2.0kb downstream 2.0kb downstream 2000 false Bd3: 55531831-55533830 Brachypodium distachyon
Bradi3g55560 5.0kb upstream 5.0kb upstream 10702 true Bd3: 55533831-55544532 Brachypodium distachyon
Bradi3g55560 5.0kb upstream 5.0kb upstream 5000 false Bd3: 55539533-55544532 Brachypodium distachyon
Bradi3g55560 5.0kb downstream 5.0kb downstream 10702 true Bd3: 55528831-55539532 Brachypodium distachyon
Bradi3g55560 5.0kb downstream 5.0kb downstream 5000 false Bd3: 55528831-55533830 Brachypodium distachyon
Bradi3g55560 10.0kb upstream 10.0kb upstream 15702 true Bd3: 55533831-55549532 Brachypodium distachyon
Bradi3g55560 10.0kb upstream 10.0kb upstream 10000 false Bd3: 55539533-55549532 Brachypodium distachyon
Bradi3g55560 10.0kb downstream 10.0kb downstream 15702 true Bd3: 55523831-55539532 Brachypodium distachyon
Bradi3g55560 10.0kb downstream 10.0kb downstream 10000 false Bd3: 55523831-55533830 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577509 5269 Grass View MSA
122042328 5273 Angiosperm View MSA
121348332 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.735     High  
cufflinks 37.901     High  
cufflinks 55.75     High  
cufflinks 32.839     High  
cufflinks 11.01     High Low
cufflinks 53.506     High  
cufflinks 41.108     High  
cufflinks 40.269     High  
cufflinks 52.849     High  
cufflinks 54.633     High  
cufflinks 48.241     High  
cufflinks 36.478     High  
cufflinks 74.581     High High
cufflinks 62.139     High  
cufflinks 36.56     High  
cufflinks 47.938     High  
cufflinks 38.21     High  
cufflinks 13.784     High Low
cufflinks 21.941     High  
cufflinks 12.289     High Low
cufflinks 30.648     High  
cufflinks 61.353     High  
cufflinks 33.535     High  
cufflinks 50.741     High  
cufflinks 46.875     High  
cufflinks 58.111     High  
cufflinks 101.451     High High
cufflinks 62.368     High  
cufflinks 54.877     High  
cufflinks 10.532       Low

0 Strain