Gene : Bradi3g56280 B. distachyon v3.1
Defline:  (1 of 1) PTHR33209:SF1 - SERINE PROTEASE SPPA, CHLOROPLASTIC Genomic Order:  6999
Name:  ? Bradi3g56280 Secondary Identifier:  ? PAC:32813123
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g56280 0.5kb upstream 0.5kb upstream 7590 true Bd3: 55983729-55991318 Brachypodium distachyon
Bradi3g56280 0.5kb upstream 0.5kb upstream 500 false Bd3: 55983729-55984228 Brachypodium distachyon
Bradi3g56280 0.5kb downstream 0.5kb downstream 7590 true Bd3: 55984229-55991818 Brachypodium distachyon
Bradi3g56280 0.5kb downstream 0.5kb downstream 500 false Bd3: 55991319-55991818 Brachypodium distachyon
Bradi3g56280 1.0kb upstream 1.0kb upstream 8090 true Bd3: 55983229-55991318 Brachypodium distachyon
Bradi3g56280 1.0kb upstream 1.0kb upstream 1000 false Bd3: 55983229-55984228 Brachypodium distachyon
Bradi3g56280 1.0kb downstream 1.0kb downstream 8090 true Bd3: 55984229-55992318 Brachypodium distachyon
Bradi3g56280 1.0kb downstream 1.0kb downstream 1000 false Bd3: 55991319-55992318 Brachypodium distachyon
Bradi3g56280 2.0kb upstream 2.0kb upstream 9090 true Bd3: 55982229-55991318 Brachypodium distachyon
Bradi3g56280 2.0kb upstream 2.0kb upstream 2000 false Bd3: 55982229-55984228 Brachypodium distachyon
Bradi3g56280 2.0kb downstream 2.0kb downstream 9090 true Bd3: 55984229-55993318 Brachypodium distachyon
Bradi3g56280 2.0kb downstream 2.0kb downstream 2000 false Bd3: 55991319-55993318 Brachypodium distachyon
Bradi3g56280 5.0kb upstream 5.0kb upstream 12090 true Bd3: 55979229-55991318 Brachypodium distachyon
Bradi3g56280 5.0kb upstream 5.0kb upstream 5000 false Bd3: 55979229-55984228 Brachypodium distachyon
Bradi3g56280 5.0kb downstream 5.0kb downstream 12090 true Bd3: 55984229-55996318 Brachypodium distachyon
Bradi3g56280 5.0kb downstream 5.0kb downstream 5000 false Bd3: 55991319-55996318 Brachypodium distachyon
Bradi3g56280 10.0kb upstream 10.0kb upstream 17090 true Bd3: 55974229-55991318 Brachypodium distachyon
Bradi3g56280 10.0kb upstream 10.0kb upstream 10000 false Bd3: 55974229-55984228 Brachypodium distachyon
Bradi3g56280 10.0kb downstream 10.0kb downstream 17090 true Bd3: 55984229-56001318 Brachypodium distachyon
Bradi3g56280 10.0kb downstream 10.0kb downstream 10000 false Bd3: 55991319-56001318 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579610 5269 Grass View MSA
122045424 5273 Angiosperm View MSA
121344928 5274 Embryophyte View MSA
123424112 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.114     High  
cufflinks 21.091     High  
cufflinks 19.582     High  
cufflinks 22.438     High  
cufflinks 14.047     High  
cufflinks 22.957     High  
cufflinks 17.736     High  
cufflinks 20.413     High  
cufflinks 22.383     High  
cufflinks 12.442     High  
cufflinks 33.203     High High
cufflinks 27.396     High  
cufflinks 29.3     High  
cufflinks 35.469     High High
cufflinks 20.148     High  
cufflinks 26.033     High  
cufflinks 14.329     High  
cufflinks 1.587       Low
cufflinks 4.512       Low
cufflinks 6.987        
cufflinks 5.491       Low
cufflinks 16.573     High  
cufflinks 21.43     High  
cufflinks 24.922     High  
cufflinks 20.279     High  
cufflinks 18.366     High  
cufflinks 22.31     High  
cufflinks 15.853     High  
cufflinks 16.834     High  
cufflinks 7.727        

0 Strain