Gene : Bradi3g56710 B. distachyon v3.1
Defline:  (1 of 1) PTHR12416:SF3 - RRNA-PROCESSING PROTEIN UTP23 HOMOLOG Genomic Order:  7047
Name:  ? Bradi3g56710 Secondary Identifier:  ? PAC:32820583
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g56710 0.5kb upstream 0.5kb upstream 2747 true Bd3: 56258771-56261517 Brachypodium distachyon
Bradi3g56710 0.5kb upstream 0.5kb upstream 500 false Bd3: 56261018-56261517 Brachypodium distachyon
Bradi3g56710 0.5kb downstream 0.5kb downstream 2747 true Bd3: 56258271-56261017 Brachypodium distachyon
Bradi3g56710 0.5kb downstream 0.5kb downstream 500 false Bd3: 56258271-56258770 Brachypodium distachyon
Bradi3g56710 1.0kb upstream 1.0kb upstream 3247 true Bd3: 56258771-56262017 Brachypodium distachyon
Bradi3g56710 1.0kb upstream 1.0kb upstream 1000 false Bd3: 56261018-56262017 Brachypodium distachyon
Bradi3g56710 1.0kb downstream 1.0kb downstream 3247 true Bd3: 56257771-56261017 Brachypodium distachyon
Bradi3g56710 1.0kb downstream 1.0kb downstream 1000 false Bd3: 56257771-56258770 Brachypodium distachyon
Bradi3g56710 2.0kb upstream 2.0kb upstream 4247 true Bd3: 56258771-56263017 Brachypodium distachyon
Bradi3g56710 2.0kb upstream 2.0kb upstream 2000 false Bd3: 56261018-56263017 Brachypodium distachyon
Bradi3g56710 2.0kb downstream 2.0kb downstream 4247 true Bd3: 56256771-56261017 Brachypodium distachyon
Bradi3g56710 2.0kb downstream 2.0kb downstream 2000 false Bd3: 56256771-56258770 Brachypodium distachyon
Bradi3g56710 5.0kb upstream 5.0kb upstream 7247 true Bd3: 56258771-56266017 Brachypodium distachyon
Bradi3g56710 5.0kb upstream 5.0kb upstream 5000 false Bd3: 56261018-56266017 Brachypodium distachyon
Bradi3g56710 5.0kb downstream 5.0kb downstream 7247 true Bd3: 56253771-56261017 Brachypodium distachyon
Bradi3g56710 5.0kb downstream 5.0kb downstream 5000 false Bd3: 56253771-56258770 Brachypodium distachyon
Bradi3g56710 10.0kb upstream 10.0kb upstream 12247 true Bd3: 56258771-56271017 Brachypodium distachyon
Bradi3g56710 10.0kb upstream 10.0kb upstream 10000 false Bd3: 56261018-56271017 Brachypodium distachyon
Bradi3g56710 10.0kb downstream 10.0kb downstream 12247 true Bd3: 56248771-56261017 Brachypodium distachyon
Bradi3g56710 10.0kb downstream 10.0kb downstream 10000 false Bd3: 56248771-56258770 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580438 5269 Grass View MSA
122042240 5273 Angiosperm View MSA
121350234 5274 Embryophyte View MSA
123426184 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.702       High
cufflinks 2.806        
cufflinks 2.015       Low
cufflinks 2.795        
cufflinks 2.787        
cufflinks 3.058        
cufflinks 3.002        
cufflinks 3.04        
cufflinks 3.068        
cufflinks 3.476        
cufflinks 4.67       High
cufflinks 2.479        
cufflinks 2.661        
cufflinks 3.546        
cufflinks 2.778        
cufflinks 3.026        
cufflinks 4.037        
cufflinks 3.335        
cufflinks 4.655       High
cufflinks 4.042        
cufflinks 3.901        
cufflinks 2.958        
cufflinks 3.33        
cufflinks 3.163        
cufflinks 3.549        
cufflinks 1.738       Low
cufflinks 2.912        
cufflinks 1.977       Low
cufflinks 2.086       Low
cufflinks 2.712        

0 Strain