Gene : Bradi3g56960 B. distachyon v3.1
Defline:  (1 of 1) PTHR23315//PTHR23315:SF52 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 10-RELATED Genomic Order:  7075
Name:  ? Bradi3g56960 Secondary Identifier:  ? PAC:32815840
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g56960 0.5kb upstream 0.5kb upstream 5000 true Bd3: 56411114-56416113 Brachypodium distachyon
Bradi3g56960 0.5kb upstream 0.5kb upstream 500 false Bd3: 56415614-56416113 Brachypodium distachyon
Bradi3g56960 0.5kb downstream 0.5kb downstream 5000 true Bd3: 56410614-56415613 Brachypodium distachyon
Bradi3g56960 0.5kb downstream 0.5kb downstream 500 false Bd3: 56410614-56411113 Brachypodium distachyon
Bradi3g56960 1.0kb upstream 1.0kb upstream 5500 true Bd3: 56411114-56416613 Brachypodium distachyon
Bradi3g56960 1.0kb upstream 1.0kb upstream 1000 false Bd3: 56415614-56416613 Brachypodium distachyon
Bradi3g56960 1.0kb downstream 1.0kb downstream 5500 true Bd3: 56410114-56415613 Brachypodium distachyon
Bradi3g56960 1.0kb downstream 1.0kb downstream 1000 false Bd3: 56410114-56411113 Brachypodium distachyon
Bradi3g56960 2.0kb upstream 2.0kb upstream 6500 true Bd3: 56411114-56417613 Brachypodium distachyon
Bradi3g56960 2.0kb upstream 2.0kb upstream 2000 false Bd3: 56415614-56417613 Brachypodium distachyon
Bradi3g56960 2.0kb downstream 2.0kb downstream 6500 true Bd3: 56409114-56415613 Brachypodium distachyon
Bradi3g56960 2.0kb downstream 2.0kb downstream 2000 false Bd3: 56409114-56411113 Brachypodium distachyon
Bradi3g56960 5.0kb upstream 5.0kb upstream 9500 true Bd3: 56411114-56420613 Brachypodium distachyon
Bradi3g56960 5.0kb upstream 5.0kb upstream 5000 false Bd3: 56415614-56420613 Brachypodium distachyon
Bradi3g56960 5.0kb downstream 5.0kb downstream 9500 true Bd3: 56406114-56415613 Brachypodium distachyon
Bradi3g56960 5.0kb downstream 5.0kb downstream 5000 false Bd3: 56406114-56411113 Brachypodium distachyon
Bradi3g56960 10.0kb upstream 10.0kb upstream 14500 true Bd3: 56411114-56425613 Brachypodium distachyon
Bradi3g56960 10.0kb upstream 10.0kb upstream 10000 false Bd3: 56415614-56425613 Brachypodium distachyon
Bradi3g56960 10.0kb downstream 10.0kb downstream 14500 true Bd3: 56401114-56415613 Brachypodium distachyon
Bradi3g56960 10.0kb downstream 10.0kb downstream 10000 false Bd3: 56401114-56411113 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572303 5269 Grass View MSA
122050659 5273 Angiosperm View MSA
121312051 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.177        
cufflinks 2.063        
cufflinks 2.472        
cufflinks 1.903        
cufflinks 0.639        
cufflinks 1.832        
cufflinks 1.679        
cufflinks 1.661        
cufflinks 1.541        
cufflinks 1.545        
cufflinks 0.352       Low
cufflinks 2.32        
cufflinks 0.507       Low
cufflinks 0.348       Low
cufflinks 1.146        
cufflinks 2.348        
cufflinks 1.282        
cufflinks 8.358       High
cufflinks 2.034        
cufflinks 0.268       Low
cufflinks 2.623        
cufflinks 2.36        
cufflinks 1.575        
cufflinks 1.653        
cufflinks 1.412        
cufflinks 2.252        
cufflinks 0.549        
cufflinks 2.188        
cufflinks 2.296        
cufflinks 3.762       High

0 Strain