Gene : Bradi4g01100 B. distachyon v3.1
Defline:  (1 of 4) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  116
Name:  ? Bradi4g01100 Secondary Identifier:  ? PAC:32788404
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CAROTENOID-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6475 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g01100 0.5kb upstream 0.5kb upstream 4053 true Bd4: 683690-687742 Brachypodium distachyon
Bradi4g01100 0.5kb upstream 0.5kb upstream 500 false Bd4: 687243-687742 Brachypodium distachyon
Bradi4g01100 0.5kb downstream 0.5kb downstream 4053 true Bd4: 683190-687242 Brachypodium distachyon
Bradi4g01100 0.5kb downstream 0.5kb downstream 500 false Bd4: 683190-683689 Brachypodium distachyon
Bradi4g01100 1.0kb upstream 1.0kb upstream 4553 true Bd4: 683690-688242 Brachypodium distachyon
Bradi4g01100 1.0kb upstream 1.0kb upstream 1000 false Bd4: 687243-688242 Brachypodium distachyon
Bradi4g01100 1.0kb downstream 1.0kb downstream 4553 true Bd4: 682690-687242 Brachypodium distachyon
Bradi4g01100 1.0kb downstream 1.0kb downstream 1000 false Bd4: 682690-683689 Brachypodium distachyon
Bradi4g01100 2.0kb upstream 2.0kb upstream 5553 true Bd4: 683690-689242 Brachypodium distachyon
Bradi4g01100 2.0kb upstream 2.0kb upstream 2000 false Bd4: 687243-689242 Brachypodium distachyon
Bradi4g01100 2.0kb downstream 2.0kb downstream 5553 true Bd4: 681690-687242 Brachypodium distachyon
Bradi4g01100 2.0kb downstream 2.0kb downstream 2000 false Bd4: 681690-683689 Brachypodium distachyon
Bradi4g01100 5.0kb upstream 5.0kb upstream 8553 true Bd4: 683690-692242 Brachypodium distachyon
Bradi4g01100 5.0kb upstream 5.0kb upstream 5000 false Bd4: 687243-692242 Brachypodium distachyon
Bradi4g01100 5.0kb downstream 5.0kb downstream 8553 true Bd4: 678690-687242 Brachypodium distachyon
Bradi4g01100 5.0kb downstream 5.0kb downstream 5000 false Bd4: 678690-683689 Brachypodium distachyon
Bradi4g01100 10.0kb upstream 10.0kb upstream 13553 true Bd4: 683690-697242 Brachypodium distachyon
Bradi4g01100 10.0kb upstream 10.0kb upstream 10000 false Bd4: 687243-697242 Brachypodium distachyon
Bradi4g01100 10.0kb downstream 10.0kb downstream 13553 true Bd4: 673690-687242 Brachypodium distachyon
Bradi4g01100 10.0kb downstream 10.0kb downstream 10000 false Bd4: 673690-683689 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
124573872 5269 Grass View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 87.717     High High
cufflinks 40.652     High  
cufflinks 57.254     High  
cufflinks 72.922     High  
cufflinks 30.943     High  
cufflinks 16.901     High  
cufflinks 16.046     High  
cufflinks 49.866     High  
cufflinks 23.748     High  
cufflinks 101.729     High High
cufflinks 26.683     High  
cufflinks 23.186     High  
cufflinks 30.125     High  
cufflinks 33.23     High  
cufflinks 100.711     High High
cufflinks 17.605     High  
cufflinks 39.618     High  
cufflinks 1.429       Low
cufflinks 32.605     High  
cufflinks 15.552     High  
cufflinks 12.374     High  
cufflinks 92.643     High High
cufflinks 66.189     High  
cufflinks 31.492     High  
cufflinks 20.071     High  
cufflinks 77.784     High  
cufflinks 39.266     High  
cufflinks 84.532     High High
cufflinks 95.19     High High
cufflinks 10.924       Low

0 Strain