Gene : Bradi4g25540 B. distachyon v3.1
Defline:  (1 of 85) K10523 - speckle-type POZ protein (SPOP) Genomic Order:  3258
Name:  ? Bradi4g25540 Secondary Identifier:  ? PAC:32786898
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g25540 0.5kb upstream 0.5kb upstream 2681 true Bd4: 30835888-30838568 Brachypodium distachyon
Bradi4g25540 0.5kb upstream 0.5kb upstream 500 false Bd4: 30835888-30836387 Brachypodium distachyon
Bradi4g25540 0.5kb downstream 0.5kb downstream 2681 true Bd4: 30836388-30839068 Brachypodium distachyon
Bradi4g25540 0.5kb downstream 0.5kb downstream 500 false Bd4: 30838569-30839068 Brachypodium distachyon
Bradi4g25540 1.0kb upstream 1.0kb upstream 3181 true Bd4: 30835388-30838568 Brachypodium distachyon
Bradi4g25540 1.0kb upstream 1.0kb upstream 1000 false Bd4: 30835388-30836387 Brachypodium distachyon
Bradi4g25540 1.0kb downstream 1.0kb downstream 3181 true Bd4: 30836388-30839568 Brachypodium distachyon
Bradi4g25540 1.0kb downstream 1.0kb downstream 1000 false Bd4: 30838569-30839568 Brachypodium distachyon
Bradi4g25540 2.0kb upstream 2.0kb upstream 4181 true Bd4: 30834388-30838568 Brachypodium distachyon
Bradi4g25540 2.0kb upstream 2.0kb upstream 2000 false Bd4: 30834388-30836387 Brachypodium distachyon
Bradi4g25540 2.0kb downstream 2.0kb downstream 4181 true Bd4: 30836388-30840568 Brachypodium distachyon
Bradi4g25540 2.0kb downstream 2.0kb downstream 2000 false Bd4: 30838569-30840568 Brachypodium distachyon
Bradi4g25540 5.0kb upstream 5.0kb upstream 7181 true Bd4: 30831388-30838568 Brachypodium distachyon
Bradi4g25540 5.0kb upstream 5.0kb upstream 5000 false Bd4: 30831388-30836387 Brachypodium distachyon
Bradi4g25540 5.0kb downstream 5.0kb downstream 7181 true Bd4: 30836388-30843568 Brachypodium distachyon
Bradi4g25540 5.0kb downstream 5.0kb downstream 5000 false Bd4: 30838569-30843568 Brachypodium distachyon
Bradi4g25540 10.0kb upstream 10.0kb upstream 12181 true Bd4: 30826388-30838568 Brachypodium distachyon
Bradi4g25540 10.0kb upstream 10.0kb upstream 10000 false Bd4: 30826388-30836387 Brachypodium distachyon
Bradi4g25540 10.0kb downstream 10.0kb downstream 12181 true Bd4: 30836388-30848568 Brachypodium distachyon
Bradi4g25540 10.0kb downstream 10.0kb downstream 10000 false Bd4: 30838569-30848568 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576240 5269 Grass View MSA
122047536 5273 Angiosperm View MSA
123429159 5275 Viridiplantae View MSA
121351417 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.41     High  
cufflinks 6.335        
cufflinks 5.874        
cufflinks 9.384        
cufflinks 10.525     High  
cufflinks 6.904        
cufflinks 6.58        
cufflinks 8.969        
cufflinks 9.27        
cufflinks 6.579        
cufflinks 0.99       Low
cufflinks 4.797        
cufflinks 3.993        
cufflinks 1.723       Low
cufflinks 13.481     High High
cufflinks 4.248        
cufflinks 10.662        
cufflinks 7.088        
cufflinks 3.507        
cufflinks 1.804       Low
cufflinks 25.416     High High
cufflinks 4.82        
cufflinks 11.166     High  
cufflinks 10.33     High  
cufflinks 9.51        
cufflinks 4.138        
cufflinks 2.795       Low
cufflinks 5.875        
cufflinks 5.984        
cufflinks 12.337     High High

0 Strain