Gene : Bradi3g59900 B. distachyon v3.1
Defline:  (1 of 6) PF01823 - MAC/Perforin domain (MACPF) Genomic Order:  7421
Name:  ? Bradi3g59900 Secondary Identifier:  ? PAC:32813843
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g59900 0.5kb upstream 0.5kb upstream 6402 true Bd3: 58753245-58759646 Brachypodium distachyon
Bradi3g59900 0.5kb upstream 0.5kb upstream 500 false Bd3: 58753245-58753744 Brachypodium distachyon
Bradi3g59900 0.5kb downstream 0.5kb downstream 6402 true Bd3: 58753745-58760146 Brachypodium distachyon
Bradi3g59900 0.5kb downstream 0.5kb downstream 500 false Bd3: 58759647-58760146 Brachypodium distachyon
Bradi3g59900 1.0kb upstream 1.0kb upstream 6902 true Bd3: 58752745-58759646 Brachypodium distachyon
Bradi3g59900 1.0kb upstream 1.0kb upstream 1000 false Bd3: 58752745-58753744 Brachypodium distachyon
Bradi3g59900 1.0kb downstream 1.0kb downstream 6902 true Bd3: 58753745-58760646 Brachypodium distachyon
Bradi3g59900 1.0kb downstream 1.0kb downstream 1000 false Bd3: 58759647-58760646 Brachypodium distachyon
Bradi3g59900 2.0kb upstream 2.0kb upstream 7902 true Bd3: 58751745-58759646 Brachypodium distachyon
Bradi3g59900 2.0kb upstream 2.0kb upstream 2000 false Bd3: 58751745-58753744 Brachypodium distachyon
Bradi3g59900 2.0kb downstream 2.0kb downstream 7902 true Bd3: 58753745-58761646 Brachypodium distachyon
Bradi3g59900 2.0kb downstream 2.0kb downstream 2000 false Bd3: 58759647-58761646 Brachypodium distachyon
Bradi3g59900 5.0kb upstream 5.0kb upstream 10902 true Bd3: 58748745-58759646 Brachypodium distachyon
Bradi3g59900 5.0kb upstream 5.0kb upstream 5000 false Bd3: 58748745-58753744 Brachypodium distachyon
Bradi3g59900 5.0kb downstream 5.0kb downstream 10902 true Bd3: 58753745-58764646 Brachypodium distachyon
Bradi3g59900 5.0kb downstream 5.0kb downstream 5000 false Bd3: 58759647-58764646 Brachypodium distachyon
Bradi3g59900 10.0kb upstream 10.0kb upstream 15902 true Bd3: 58743745-58759646 Brachypodium distachyon
Bradi3g59900 10.0kb upstream 10.0kb upstream 10000 false Bd3: 58743745-58753744 Brachypodium distachyon
Bradi3g59900 10.0kb downstream 10.0kb downstream 15902 true Bd3: 58753745-58769646 Brachypodium distachyon
Bradi3g59900 10.0kb downstream 10.0kb downstream 10000 false Bd3: 58759647-58769646 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572831 5269 Grass View MSA
122048328 5273 Angiosperm View MSA
121310931 5274 Embryophyte View MSA
123348303 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.075     Low  
cufflinks 0.081     Low  
cufflinks 0.086     Low  
cufflinks 0.077     Low  
cufflinks 0.098        
cufflinks 0.068     Low  
cufflinks 0.072     Low  
cufflinks 0.097        
cufflinks 0.079     Low  
cufflinks 0.088     Low  
cufflinks 0.033     Low Low
cufflinks 0.066     Low  
cufflinks 0.026     Low Low
cufflinks 0.026     Low Low
cufflinks 0.121        
cufflinks 0.053     Low  
cufflinks 0.069     Low  
cufflinks 0.204       High
cufflinks 0.385       High
cufflinks 0.093     Low  
cufflinks 0.081     Low  
cufflinks 0.05     Low  
cufflinks 0.072     Low  
cufflinks 0.045     Low  
cufflinks 0.052     Low  
cufflinks 0.07     Low  
cufflinks 0.073     Low  
cufflinks 0.073     Low  
cufflinks 0.049     Low  
cufflinks 0.104     Low  

0 Strain