Gene : Bradi4g26550 B. distachyon v3.1
Defline:  (1 of 2) PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Genomic Order:  3386
Name:  ? Bradi4g26550 Secondary Identifier:  ? PAC:32786334
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g26550 0.5kb upstream 0.5kb upstream 2658 true Bd4: 31572737-31575394 Brachypodium distachyon
Bradi4g26550 0.5kb upstream 0.5kb upstream 500 false Bd4: 31572737-31573236 Brachypodium distachyon
Bradi4g26550 0.5kb downstream 0.5kb downstream 2658 true Bd4: 31573237-31575894 Brachypodium distachyon
Bradi4g26550 0.5kb downstream 0.5kb downstream 500 false Bd4: 31575395-31575894 Brachypodium distachyon
Bradi4g26550 1.0kb upstream 1.0kb upstream 3158 true Bd4: 31572237-31575394 Brachypodium distachyon
Bradi4g26550 1.0kb upstream 1.0kb upstream 1000 false Bd4: 31572237-31573236 Brachypodium distachyon
Bradi4g26550 1.0kb downstream 1.0kb downstream 3158 true Bd4: 31573237-31576394 Brachypodium distachyon
Bradi4g26550 1.0kb downstream 1.0kb downstream 1000 false Bd4: 31575395-31576394 Brachypodium distachyon
Bradi4g26550 2.0kb upstream 2.0kb upstream 4158 true Bd4: 31571237-31575394 Brachypodium distachyon
Bradi4g26550 2.0kb upstream 2.0kb upstream 2000 false Bd4: 31571237-31573236 Brachypodium distachyon
Bradi4g26550 2.0kb downstream 2.0kb downstream 4158 true Bd4: 31573237-31577394 Brachypodium distachyon
Bradi4g26550 2.0kb downstream 2.0kb downstream 2000 false Bd4: 31575395-31577394 Brachypodium distachyon
Bradi4g26550 5.0kb upstream 5.0kb upstream 7158 true Bd4: 31568237-31575394 Brachypodium distachyon
Bradi4g26550 5.0kb upstream 5.0kb upstream 5000 false Bd4: 31568237-31573236 Brachypodium distachyon
Bradi4g26550 5.0kb downstream 5.0kb downstream 7158 true Bd4: 31573237-31580394 Brachypodium distachyon
Bradi4g26550 5.0kb downstream 5.0kb downstream 5000 false Bd4: 31575395-31580394 Brachypodium distachyon
Bradi4g26550 10.0kb upstream 10.0kb upstream 12158 true Bd4: 31563237-31575394 Brachypodium distachyon
Bradi4g26550 10.0kb upstream 10.0kb upstream 10000 false Bd4: 31563237-31573236 Brachypodium distachyon
Bradi4g26550 10.0kb downstream 10.0kb downstream 12158 true Bd4: 31573237-31585394 Brachypodium distachyon
Bradi4g26550 10.0kb downstream 10.0kb downstream 10000 false Bd4: 31575395-31585394 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581114 5269 Grass View MSA
122051300 5273 Angiosperm View MSA
121352511 5274 Embryophyte View MSA
123382830 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.708        
cufflinks 8.958        
cufflinks 8.342        
cufflinks 8.81        
cufflinks 4.232       Low
cufflinks 7.565        
cufflinks 9.83     High  
cufflinks 7.409        
cufflinks 7.157        
cufflinks 6.086        
cufflinks 5.686        
cufflinks 4.97        
cufflinks 4.22       Low
cufflinks 5.351        
cufflinks 3.478       Low
cufflinks 7.265        
cufflinks 7.458        
cufflinks 10.844       High
cufflinks 15.889     High High
cufflinks 3.108       Low
cufflinks 10.457       High
cufflinks 5.428        
cufflinks 6.419        
cufflinks 5.839        
cufflinks 7.97        
cufflinks 7.815        
cufflinks 5.86        
cufflinks 8.331        
cufflinks 7.314        
cufflinks 8.174        

0 Strain