Gene : Bradi4g00430 B. distachyon v3.1
Defline:  (1 of 2) PTHR19328//PTHR19328:SF36 - PQQ OXIDOREDUCTASE-RELATED Genomic Order:  31
Name:  ? Bradi4g00430 Secondary Identifier:  ? PAC:32785267
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon GLUCOSE1PMETAB-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g00430 0.5kb upstream 0.5kb upstream 5353 true Bd4: 172361-177713 Brachypodium distachyon
Bradi4g00430 0.5kb upstream 0.5kb upstream 500 false Bd4: 177214-177713 Brachypodium distachyon
Bradi4g00430 0.5kb downstream 0.5kb downstream 5353 true Bd4: 171861-177213 Brachypodium distachyon
Bradi4g00430 0.5kb downstream 0.5kb downstream 500 false Bd4: 171861-172360 Brachypodium distachyon
Bradi4g00430 1.0kb upstream 1.0kb upstream 5853 true Bd4: 172361-178213 Brachypodium distachyon
Bradi4g00430 1.0kb upstream 1.0kb upstream 1000 false Bd4: 177214-178213 Brachypodium distachyon
Bradi4g00430 1.0kb downstream 1.0kb downstream 5853 true Bd4: 171361-177213 Brachypodium distachyon
Bradi4g00430 1.0kb downstream 1.0kb downstream 1000 false Bd4: 171361-172360 Brachypodium distachyon
Bradi4g00430 2.0kb upstream 2.0kb upstream 6853 true Bd4: 172361-179213 Brachypodium distachyon
Bradi4g00430 2.0kb upstream 2.0kb upstream 2000 false Bd4: 177214-179213 Brachypodium distachyon
Bradi4g00430 2.0kb downstream 2.0kb downstream 6853 true Bd4: 170361-177213 Brachypodium distachyon
Bradi4g00430 2.0kb downstream 2.0kb downstream 2000 false Bd4: 170361-172360 Brachypodium distachyon
Bradi4g00430 5.0kb upstream 5.0kb upstream 9853 true Bd4: 172361-182213 Brachypodium distachyon
Bradi4g00430 5.0kb upstream 5.0kb upstream 5000 false Bd4: 177214-182213 Brachypodium distachyon
Bradi4g00430 5.0kb downstream 5.0kb downstream 9853 true Bd4: 167361-177213 Brachypodium distachyon
Bradi4g00430 5.0kb downstream 5.0kb downstream 5000 false Bd4: 167361-172360 Brachypodium distachyon
Bradi4g00430 10.0kb upstream 10.0kb upstream 14853 true Bd4: 172361-187213 Brachypodium distachyon
Bradi4g00430 10.0kb upstream 10.0kb upstream 10000 false Bd4: 177214-187213 Brachypodium distachyon
Bradi4g00430 10.0kb downstream 10.0kb downstream 14853 true Bd4: 162361-177213 Brachypodium distachyon
Bradi4g00430 10.0kb downstream 10.0kb downstream 10000 false Bd4: 162361-172360 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580161 5269 Grass View MSA
122045052 5273 Angiosperm View MSA
121344764 5274 Embryophyte View MSA
123380098 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.671        
cufflinks 4.655        
cufflinks 3.425        
cufflinks 2.773        
cufflinks 0.698       Low
cufflinks 4.809        
cufflinks 4.407        
cufflinks 1.836        
cufflinks 3.634        
cufflinks 1.423        
cufflinks 3.886        
cufflinks 3.67        
cufflinks 2.478        
cufflinks 3.016        
cufflinks 0.82       Low
cufflinks 4.624        
cufflinks 2.157        
cufflinks 25.466     High High
cufflinks 2.515        
cufflinks 0.173       Low
cufflinks 5.281        
cufflinks 2.573        
cufflinks 1.464        
cufflinks 3.111        
cufflinks 3.148        
cufflinks 2.785        
cufflinks 2.894        
cufflinks 2.377        
cufflinks 2.115        
cufflinks 3.622        

0 Strain