Gene : Bradi4g00580 B. distachyon v3.1
Defline:  (1 of 3) PTHR22953//PTHR22953:SF29 - ACID PHOSPHATASE RELATED // SUBFAMILY NOT NAMED Genomic Order:  50
Name:  ? Bradi4g00580 Secondary Identifier:  ? PAC:32789297
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5083 Brachypodium distachyon pathologic  
Bdistachyon PWY-6348 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g00580 0.5kb upstream 0.5kb upstream 3452 true Bd4: 267725-271176 Brachypodium distachyon
Bradi4g00580 0.5kb upstream 0.5kb upstream 500 false Bd4: 267725-268224 Brachypodium distachyon
Bradi4g00580 0.5kb downstream 0.5kb downstream 3452 true Bd4: 268225-271676 Brachypodium distachyon
Bradi4g00580 0.5kb downstream 0.5kb downstream 500 false Bd4: 271177-271676 Brachypodium distachyon
Bradi4g00580 1.0kb upstream 1.0kb upstream 3952 true Bd4: 267225-271176 Brachypodium distachyon
Bradi4g00580 1.0kb upstream 1.0kb upstream 1000 false Bd4: 267225-268224 Brachypodium distachyon
Bradi4g00580 1.0kb downstream 1.0kb downstream 3952 true Bd4: 268225-272176 Brachypodium distachyon
Bradi4g00580 1.0kb downstream 1.0kb downstream 1000 false Bd4: 271177-272176 Brachypodium distachyon
Bradi4g00580 2.0kb upstream 2.0kb upstream 4952 true Bd4: 266225-271176 Brachypodium distachyon
Bradi4g00580 2.0kb upstream 2.0kb upstream 2000 false Bd4: 266225-268224 Brachypodium distachyon
Bradi4g00580 2.0kb downstream 2.0kb downstream 4952 true Bd4: 268225-273176 Brachypodium distachyon
Bradi4g00580 2.0kb downstream 2.0kb downstream 2000 false Bd4: 271177-273176 Brachypodium distachyon
Bradi4g00580 5.0kb upstream 5.0kb upstream 7952 true Bd4: 263225-271176 Brachypodium distachyon
Bradi4g00580 5.0kb upstream 5.0kb upstream 5000 false Bd4: 263225-268224 Brachypodium distachyon
Bradi4g00580 5.0kb downstream 5.0kb downstream 7952 true Bd4: 268225-276176 Brachypodium distachyon
Bradi4g00580 5.0kb downstream 5.0kb downstream 5000 false Bd4: 271177-276176 Brachypodium distachyon
Bradi4g00580 10.0kb upstream 10.0kb upstream 12952 true Bd4: 258225-271176 Brachypodium distachyon
Bradi4g00580 10.0kb upstream 10.0kb upstream 10000 false Bd4: 258225-268224 Brachypodium distachyon
Bradi4g00580 10.0kb downstream 10.0kb downstream 12952 true Bd4: 268225-281176 Brachypodium distachyon
Bradi4g00580 10.0kb downstream 10.0kb downstream 10000 false Bd4: 271177-281176 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993093 5273 Angiosperm View MSA
124574871 5269 Grass View MSA
121351600 5274 Embryophyte View MSA
123426131 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.043     High High
cufflinks 3.687        
cufflinks 2.285        
cufflinks 3.209        
cufflinks 7.644       High
cufflinks 4.096        
cufflinks 3.909        
cufflinks 3.929        
cufflinks 4.466        
cufflinks 2.465        
cufflinks 4.365        
cufflinks 4.338        
cufflinks 3.894        
cufflinks 5.187        
cufflinks 7.042        
cufflinks 4.432        
cufflinks 5.705        
cufflinks 11.226       High
cufflinks 9.293       High
cufflinks 6.711        
cufflinks 2.174       Low
cufflinks 2.61        
cufflinks 2.95        
cufflinks 4.748        
cufflinks 3.272        
cufflinks 1.922       Low
cufflinks 3.215        
cufflinks 1.999       Low
cufflinks 1.831       Low
cufflinks 3.527        

0 Strain