Gene : Bradi4g00486 B. distachyon v3.1
Defline:  (1 of 2) PTHR12418:SF33 - 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 Genomic Order:  39
Name:  ? Bradi4g00486 Secondary Identifier:  ? PAC:32788620
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5837 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g00486 0.5kb upstream 0.5kb upstream 3100 true Bd4: 211058-214157 Brachypodium distachyon
Bradi4g00486 0.5kb upstream 0.5kb upstream 500 false Bd4: 211058-211557 Brachypodium distachyon
Bradi4g00486 0.5kb downstream 0.5kb downstream 3100 true Bd4: 211558-214657 Brachypodium distachyon
Bradi4g00486 0.5kb downstream 0.5kb downstream 500 false Bd4: 214158-214657 Brachypodium distachyon
Bradi4g00486 1.0kb upstream 1.0kb upstream 3600 true Bd4: 210558-214157 Brachypodium distachyon
Bradi4g00486 1.0kb upstream 1.0kb upstream 1000 false Bd4: 210558-211557 Brachypodium distachyon
Bradi4g00486 1.0kb downstream 1.0kb downstream 3600 true Bd4: 211558-215157 Brachypodium distachyon
Bradi4g00486 1.0kb downstream 1.0kb downstream 1000 false Bd4: 214158-215157 Brachypodium distachyon
Bradi4g00486 2.0kb upstream 2.0kb upstream 4600 true Bd4: 209558-214157 Brachypodium distachyon
Bradi4g00486 2.0kb upstream 2.0kb upstream 2000 false Bd4: 209558-211557 Brachypodium distachyon
Bradi4g00486 2.0kb downstream 2.0kb downstream 4600 true Bd4: 211558-216157 Brachypodium distachyon
Bradi4g00486 2.0kb downstream 2.0kb downstream 2000 false Bd4: 214158-216157 Brachypodium distachyon
Bradi4g00486 5.0kb upstream 5.0kb upstream 7600 true Bd4: 206558-214157 Brachypodium distachyon
Bradi4g00486 5.0kb upstream 5.0kb upstream 5000 false Bd4: 206558-211557 Brachypodium distachyon
Bradi4g00486 5.0kb downstream 5.0kb downstream 7600 true Bd4: 211558-219157 Brachypodium distachyon
Bradi4g00486 5.0kb downstream 5.0kb downstream 5000 false Bd4: 214158-219157 Brachypodium distachyon
Bradi4g00486 10.0kb upstream 10.0kb upstream 12600 true Bd4: 201558-214157 Brachypodium distachyon
Bradi4g00486 10.0kb upstream 10.0kb upstream 10000 false Bd4: 201558-211557 Brachypodium distachyon
Bradi4g00486 10.0kb downstream 10.0kb downstream 12600 true Bd4: 211558-224157 Brachypodium distachyon
Bradi4g00486 10.0kb downstream 10.0kb downstream 10000 false Bd4: 214158-224157 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584994 5269 Grass View MSA
122042191 5273 Angiosperm View MSA
121348407 5274 Embryophyte View MSA
123380851 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.055        
cufflinks 0.399       Low
cufflinks 0.55        
cufflinks 0.707        
cufflinks 3.537       High
cufflinks 0.453       Low
cufflinks 0.543        
cufflinks 1.693        
cufflinks 0.707        
cufflinks 3.18        
cufflinks 0.69        
cufflinks 0.784        
cufflinks 0.925        
cufflinks 0.434       Low
cufflinks 3.388        
cufflinks 0.3       Low
cufflinks 3.017        
cufflinks 1.212        
cufflinks 2.531        
cufflinks 12.278     High High
cufflinks 7.056       High
cufflinks 0.996        
cufflinks 2.373        
cufflinks 1.406        
cufflinks 0.811        
cufflinks 0.548        
cufflinks 0.429       Low
cufflinks 1.79        
cufflinks 3.326        
cufflinks 0.923        

0 Strain