Gene : Bradi4g00490 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  40
Name:  ? Bradi4g00490 Secondary Identifier:  ? PAC:32786017
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g00490 0.5kb upstream 0.5kb upstream 6275 true Bd4: 214609-220883 Brachypodium distachyon
Bradi4g00490 0.5kb upstream 0.5kb upstream 500 false Bd4: 214609-215108 Brachypodium distachyon
Bradi4g00490 0.5kb downstream 0.5kb downstream 6275 true Bd4: 215109-221383 Brachypodium distachyon
Bradi4g00490 0.5kb downstream 0.5kb downstream 500 false Bd4: 220884-221383 Brachypodium distachyon
Bradi4g00490 1.0kb upstream 1.0kb upstream 6775 true Bd4: 214109-220883 Brachypodium distachyon
Bradi4g00490 1.0kb upstream 1.0kb upstream 1000 false Bd4: 214109-215108 Brachypodium distachyon
Bradi4g00490 1.0kb downstream 1.0kb downstream 6775 true Bd4: 215109-221883 Brachypodium distachyon
Bradi4g00490 1.0kb downstream 1.0kb downstream 1000 false Bd4: 220884-221883 Brachypodium distachyon
Bradi4g00490 2.0kb upstream 2.0kb upstream 7775 true Bd4: 213109-220883 Brachypodium distachyon
Bradi4g00490 2.0kb upstream 2.0kb upstream 2000 false Bd4: 213109-215108 Brachypodium distachyon
Bradi4g00490 2.0kb downstream 2.0kb downstream 7775 true Bd4: 215109-222883 Brachypodium distachyon
Bradi4g00490 2.0kb downstream 2.0kb downstream 2000 false Bd4: 220884-222883 Brachypodium distachyon
Bradi4g00490 5.0kb upstream 5.0kb upstream 10775 true Bd4: 210109-220883 Brachypodium distachyon
Bradi4g00490 5.0kb upstream 5.0kb upstream 5000 false Bd4: 210109-215108 Brachypodium distachyon
Bradi4g00490 5.0kb downstream 5.0kb downstream 10775 true Bd4: 215109-225883 Brachypodium distachyon
Bradi4g00490 5.0kb downstream 5.0kb downstream 5000 false Bd4: 220884-225883 Brachypodium distachyon
Bradi4g00490 10.0kb upstream 10.0kb upstream 15775 true Bd4: 205109-220883 Brachypodium distachyon
Bradi4g00490 10.0kb upstream 10.0kb upstream 10000 false Bd4: 205109-215108 Brachypodium distachyon
Bradi4g00490 10.0kb downstream 10.0kb downstream 15775 true Bd4: 215109-230883 Brachypodium distachyon
Bradi4g00490 10.0kb downstream 10.0kb downstream 10000 false Bd4: 220884-230883 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578300 5269 Grass View MSA
122042407 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.114       High
cufflinks 2.274        
cufflinks 2.246        
cufflinks 1.742       Low
cufflinks 2.515        
cufflinks 2.149        
cufflinks 1.725       Low
cufflinks 3.13        
cufflinks 2.581        
cufflinks 2.391        
cufflinks 1.988        
cufflinks 4.026       High
cufflinks 1.963        
cufflinks 1.629       Low
cufflinks 5.221       High
cufflinks 2.173        
cufflinks 1.978        
cufflinks 3.164        
cufflinks 2.864        
cufflinks 2.96        
cufflinks 2.347        
cufflinks 3.586       High
cufflinks 3.644       High
cufflinks 2.563        
cufflinks 2.138        
cufflinks 2.052        
cufflinks 3.012        
cufflinks 2.379        
cufflinks 3.156        
cufflinks 2.887        

0 Strain