Gene : Bradi4g06520 B. distachyon v3.1
Defline:  (1 of 1) PF15811 - Small VCP/p97-interacting protein (SVIP) Genomic Order:  849
Name:  ? Bradi4g06520 Secondary Identifier:  ? PAC:32790952
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g06520 0.5kb upstream 0.5kb upstream 6519 true Bd4: 5478189-5484707 Brachypodium distachyon
Bradi4g06520 0.5kb upstream 0.5kb upstream 500 false Bd4: 5478189-5478688 Brachypodium distachyon
Bradi4g06520 0.5kb downstream 0.5kb downstream 6519 true Bd4: 5478689-5485207 Brachypodium distachyon
Bradi4g06520 0.5kb downstream 0.5kb downstream 500 false Bd4: 5484708-5485207 Brachypodium distachyon
Bradi4g06520 1.0kb upstream 1.0kb upstream 7019 true Bd4: 5477689-5484707 Brachypodium distachyon
Bradi4g06520 1.0kb upstream 1.0kb upstream 1000 false Bd4: 5477689-5478688 Brachypodium distachyon
Bradi4g06520 1.0kb downstream 1.0kb downstream 7019 true Bd4: 5478689-5485707 Brachypodium distachyon
Bradi4g06520 1.0kb downstream 1.0kb downstream 1000 false Bd4: 5484708-5485707 Brachypodium distachyon
Bradi4g06520 2.0kb upstream 2.0kb upstream 8019 true Bd4: 5476689-5484707 Brachypodium distachyon
Bradi4g06520 2.0kb upstream 2.0kb upstream 2000 false Bd4: 5476689-5478688 Brachypodium distachyon
Bradi4g06520 2.0kb downstream 2.0kb downstream 8019 true Bd4: 5478689-5486707 Brachypodium distachyon
Bradi4g06520 2.0kb downstream 2.0kb downstream 2000 false Bd4: 5484708-5486707 Brachypodium distachyon
Bradi4g06520 5.0kb upstream 5.0kb upstream 11019 true Bd4: 5473689-5484707 Brachypodium distachyon
Bradi4g06520 5.0kb upstream 5.0kb upstream 5000 false Bd4: 5473689-5478688 Brachypodium distachyon
Bradi4g06520 5.0kb downstream 5.0kb downstream 11019 true Bd4: 5478689-5489707 Brachypodium distachyon
Bradi4g06520 5.0kb downstream 5.0kb downstream 5000 false Bd4: 5484708-5489707 Brachypodium distachyon
Bradi4g06520 10.0kb upstream 10.0kb upstream 16019 true Bd4: 5468689-5484707 Brachypodium distachyon
Bradi4g06520 10.0kb upstream 10.0kb upstream 10000 false Bd4: 5468689-5478688 Brachypodium distachyon
Bradi4g06520 10.0kb downstream 10.0kb downstream 16019 true Bd4: 5478689-5494707 Brachypodium distachyon
Bradi4g06520 10.0kb downstream 10.0kb downstream 10000 false Bd4: 5484708-5494707 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571797 5269 Grass View MSA
122050042 5273 Angiosperm View MSA
121311703 5274 Embryophyte View MSA
123348966 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.623       Low
cufflinks 0.837        
cufflinks 0.956        
cufflinks 1.4        
cufflinks 1.083        
cufflinks 0.692       Low
cufflinks 0.872        
cufflinks 0.569       Low
cufflinks 0.545       Low
cufflinks 1.266        
cufflinks 1.025        
cufflinks 0.727       Low
cufflinks 0.882        
cufflinks 0.906        
cufflinks 0.708       Low
cufflinks 0.699       Low
cufflinks 1.176        
cufflinks 1.577        
cufflinks 1.934       High
cufflinks 2.616       High
cufflinks 1.682       High
cufflinks 0.688       Low
cufflinks 0.581       Low
cufflinks 0.633       Low
cufflinks 1.07        
cufflinks 1.599        
cufflinks 1.066        
cufflinks 1.424        
cufflinks 0.954        
cufflinks 1.096        

0 Strain