Gene : Bradi4g03680 B. distachyon v3.1
Defline:  (1 of 1) PTHR14363//PTHR14363:SF17 - HEPARANASE-RELATED // HEPARANASE-LIKE PROTEIN 1-RELATED Genomic Order:  462
Name:  ? Bradi4g03680 Secondary Identifier:  ? PAC:32783324
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7213 Brachypodium distachyon pathologic  
Bdistachyon PWY-7214 Brachypodium distachyon pathologic  
Bdistachyon PWY-7445 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g03680 0.5kb upstream 0.5kb upstream 4851 true Bd4: 2927325-2932175 Brachypodium distachyon
Bradi4g03680 0.5kb upstream 0.5kb upstream 500 false Bd4: 2931676-2932175 Brachypodium distachyon
Bradi4g03680 0.5kb downstream 0.5kb downstream 4851 true Bd4: 2926825-2931675 Brachypodium distachyon
Bradi4g03680 0.5kb downstream 0.5kb downstream 500 false Bd4: 2926825-2927324 Brachypodium distachyon
Bradi4g03680 1.0kb upstream 1.0kb upstream 5351 true Bd4: 2927325-2932675 Brachypodium distachyon
Bradi4g03680 1.0kb upstream 1.0kb upstream 1000 false Bd4: 2931676-2932675 Brachypodium distachyon
Bradi4g03680 1.0kb downstream 1.0kb downstream 5351 true Bd4: 2926325-2931675 Brachypodium distachyon
Bradi4g03680 1.0kb downstream 1.0kb downstream 1000 false Bd4: 2926325-2927324 Brachypodium distachyon
Bradi4g03680 2.0kb upstream 2.0kb upstream 6351 true Bd4: 2927325-2933675 Brachypodium distachyon
Bradi4g03680 2.0kb upstream 2.0kb upstream 2000 false Bd4: 2931676-2933675 Brachypodium distachyon
Bradi4g03680 2.0kb downstream 2.0kb downstream 6351 true Bd4: 2925325-2931675 Brachypodium distachyon
Bradi4g03680 2.0kb downstream 2.0kb downstream 2000 false Bd4: 2925325-2927324 Brachypodium distachyon
Bradi4g03680 5.0kb upstream 5.0kb upstream 9351 true Bd4: 2927325-2936675 Brachypodium distachyon
Bradi4g03680 5.0kb upstream 5.0kb upstream 5000 false Bd4: 2931676-2936675 Brachypodium distachyon
Bradi4g03680 5.0kb downstream 5.0kb downstream 9351 true Bd4: 2922325-2931675 Brachypodium distachyon
Bradi4g03680 5.0kb downstream 5.0kb downstream 5000 false Bd4: 2922325-2927324 Brachypodium distachyon
Bradi4g03680 10.0kb upstream 10.0kb upstream 14351 true Bd4: 2927325-2941675 Brachypodium distachyon
Bradi4g03680 10.0kb upstream 10.0kb upstream 10000 false Bd4: 2931676-2941675 Brachypodium distachyon
Bradi4g03680 10.0kb downstream 10.0kb downstream 14351 true Bd4: 2917325-2931675 Brachypodium distachyon
Bradi4g03680 10.0kb downstream 10.0kb downstream 10000 false Bd4: 2917325-2927324 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576605 5269 Grass View MSA
122049598 5273 Angiosperm View MSA
121348264 5274 Embryophyte View MSA
123380798 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.883        
cufflinks 4.2        
cufflinks 6.605       High
cufflinks 3.742        
cufflinks 2.584        
cufflinks 3.997        
cufflinks 4.049        
cufflinks 3.662        
cufflinks 4.034        
cufflinks 4.215        
cufflinks 2.176       Low
cufflinks 5.395        
cufflinks 4.914        
cufflinks 1.696       Low
cufflinks 3.827        
cufflinks 4.944        
cufflinks 3.081        
cufflinks 7.393       High
cufflinks 3.215        
cufflinks 0.807       Low
cufflinks 4.242        
cufflinks 5.336        
cufflinks 3.022        
cufflinks 3.304        
cufflinks 3.313        
cufflinks 6.553       High
cufflinks 2.443        
cufflinks 5.776        
cufflinks 5.299        
cufflinks 6.678       High

0 Strain