Gene : Bradi4g05300 B. distachyon v3.1
Defline:  (1 of 1) PTHR11349:SF44 - NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC Genomic Order:  684
Name:  ? Bradi4g05300 Secondary Identifier:  ? PAC:32785216
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Sequence Feature Displayer

Ontology Annotation Displayer

17 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY0-162 Brachypodium distachyon pathologic  
Bdistachyon PWY-7176 Brachypodium distachyon pathologic  
Bdistachyon PWY-7184 Brachypodium distachyon pathologic  
Bdistachyon PWY-7196 Brachypodium distachyon pathologic  
Bdistachyon PWY-7197 Brachypodium distachyon pathologic  
Bdistachyon PWY-7200 Brachypodium distachyon pathologic  
Bdistachyon PWY-7205 Brachypodium distachyon pathologic  
Bdistachyon PWY-7208 Brachypodium distachyon pathologic  
Bdistachyon PWY-7210 Brachypodium distachyon pathologic  
Bdistachyon PWY-7211 Brachypodium distachyon pathologic  
Bdistachyon PWY-7221 Brachypodium distachyon pathologic  
Bdistachyon PWY-7224 Brachypodium distachyon pathologic  
Bdistachyon PWY-7226 Brachypodium distachyon pathologic  
Bdistachyon PWY-7227 Brachypodium distachyon pathologic  
Bdistachyon PWY-7228 Brachypodium distachyon pathologic  
Bdistachyon PWY-7229 Brachypodium distachyon pathologic  
Bdistachyon PWY-841 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g05300 0.5kb upstream 0.5kb upstream 3691 true Bd4: 4380063-4383753 Brachypodium distachyon
Bradi4g05300 0.5kb upstream 0.5kb upstream 500 false Bd4: 4383254-4383753 Brachypodium distachyon
Bradi4g05300 0.5kb downstream 0.5kb downstream 3691 true Bd4: 4379563-4383253 Brachypodium distachyon
Bradi4g05300 0.5kb downstream 0.5kb downstream 500 false Bd4: 4379563-4380062 Brachypodium distachyon
Bradi4g05300 1.0kb upstream 1.0kb upstream 4191 true Bd4: 4380063-4384253 Brachypodium distachyon
Bradi4g05300 1.0kb upstream 1.0kb upstream 1000 false Bd4: 4383254-4384253 Brachypodium distachyon
Bradi4g05300 1.0kb downstream 1.0kb downstream 4191 true Bd4: 4379063-4383253 Brachypodium distachyon
Bradi4g05300 1.0kb downstream 1.0kb downstream 1000 false Bd4: 4379063-4380062 Brachypodium distachyon
Bradi4g05300 2.0kb upstream 2.0kb upstream 5191 true Bd4: 4380063-4385253 Brachypodium distachyon
Bradi4g05300 2.0kb upstream 2.0kb upstream 2000 false Bd4: 4383254-4385253 Brachypodium distachyon
Bradi4g05300 2.0kb downstream 2.0kb downstream 5191 true Bd4: 4378063-4383253 Brachypodium distachyon
Bradi4g05300 2.0kb downstream 2.0kb downstream 2000 false Bd4: 4378063-4380062 Brachypodium distachyon
Bradi4g05300 5.0kb upstream 5.0kb upstream 8191 true Bd4: 4380063-4388253 Brachypodium distachyon
Bradi4g05300 5.0kb upstream 5.0kb upstream 5000 false Bd4: 4383254-4388253 Brachypodium distachyon
Bradi4g05300 5.0kb downstream 5.0kb downstream 8191 true Bd4: 4375063-4383253 Brachypodium distachyon
Bradi4g05300 5.0kb downstream 5.0kb downstream 5000 false Bd4: 4375063-4380062 Brachypodium distachyon
Bradi4g05300 10.0kb upstream 10.0kb upstream 13191 true Bd4: 4380063-4393253 Brachypodium distachyon
Bradi4g05300 10.0kb upstream 10.0kb upstream 10000 false Bd4: 4383254-4393253 Brachypodium distachyon
Bradi4g05300 10.0kb downstream 10.0kb downstream 13191 true Bd4: 4370063-4383253 Brachypodium distachyon
Bradi4g05300 10.0kb downstream 10.0kb downstream 10000 false Bd4: 4370063-4380062 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571700 5269 Grass View MSA
122050213 5273 Angiosperm View MSA
123428962 5275 Viridiplantae View MSA
121346571 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.144     High  
cufflinks 47.848     High  
cufflinks 42.9     High  
cufflinks 57.036     High High
cufflinks 30.359     High  
cufflinks 30.323     High  
cufflinks 40.165     High  
cufflinks 30.291     High  
cufflinks 26.648     High  
cufflinks 66.194     High High
cufflinks 10.908     High Low
cufflinks 27.805     High  
cufflinks 17.813     High  
cufflinks 11.506     High Low
cufflinks 31.656     High  
cufflinks 36.166     High  
cufflinks 44.862     High  
cufflinks 5.188       Low
cufflinks 35.726     High  
cufflinks 15.645     High  
cufflinks 20.099     High  
cufflinks 44.377     High  
cufflinks 29.336     High  
cufflinks 26.557     High  
cufflinks 36.708     High  
cufflinks 61.77     High High
cufflinks 8.395       Low
cufflinks 57.637     High High
cufflinks 54.024     High  
cufflinks 30.94     High  

0 Strain