Gene : Bradi4g05560 B. distachyon v3.1
Defline:  (1 of 1) PTHR21098 - RIBOFLAVIN SYNTHASE ALPHA CHAIN Genomic Order:  722
Name:  ? Bradi4g05560 Secondary Identifier:  ? PAC:32784173
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon RIBOSYN2-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g05560 0.5kb upstream 0.5kb upstream 1376 true Bd4: 4677320-4678695 Brachypodium distachyon
Bradi4g05560 0.5kb upstream 0.5kb upstream 500 false Bd4: 4678196-4678695 Brachypodium distachyon
Bradi4g05560 0.5kb downstream 0.5kb downstream 1376 true Bd4: 4676820-4678195 Brachypodium distachyon
Bradi4g05560 0.5kb downstream 0.5kb downstream 500 false Bd4: 4676820-4677319 Brachypodium distachyon
Bradi4g05560 1.0kb upstream 1.0kb upstream 1876 true Bd4: 4677320-4679195 Brachypodium distachyon
Bradi4g05560 1.0kb upstream 1.0kb upstream 1000 false Bd4: 4678196-4679195 Brachypodium distachyon
Bradi4g05560 1.0kb downstream 1.0kb downstream 1876 true Bd4: 4676320-4678195 Brachypodium distachyon
Bradi4g05560 1.0kb downstream 1.0kb downstream 1000 false Bd4: 4676320-4677319 Brachypodium distachyon
Bradi4g05560 2.0kb upstream 2.0kb upstream 2876 true Bd4: 4677320-4680195 Brachypodium distachyon
Bradi4g05560 2.0kb upstream 2.0kb upstream 2000 false Bd4: 4678196-4680195 Brachypodium distachyon
Bradi4g05560 2.0kb downstream 2.0kb downstream 2876 true Bd4: 4675320-4678195 Brachypodium distachyon
Bradi4g05560 2.0kb downstream 2.0kb downstream 2000 false Bd4: 4675320-4677319 Brachypodium distachyon
Bradi4g05560 5.0kb upstream 5.0kb upstream 5876 true Bd4: 4677320-4683195 Brachypodium distachyon
Bradi4g05560 5.0kb upstream 5.0kb upstream 5000 false Bd4: 4678196-4683195 Brachypodium distachyon
Bradi4g05560 5.0kb downstream 5.0kb downstream 5876 true Bd4: 4672320-4678195 Brachypodium distachyon
Bradi4g05560 5.0kb downstream 5.0kb downstream 5000 false Bd4: 4672320-4677319 Brachypodium distachyon
Bradi4g05560 10.0kb upstream 10.0kb upstream 10876 true Bd4: 4677320-4688195 Brachypodium distachyon
Bradi4g05560 10.0kb upstream 10.0kb upstream 10000 false Bd4: 4678196-4688195 Brachypodium distachyon
Bradi4g05560 10.0kb downstream 10.0kb downstream 10876 true Bd4: 4667320-4678195 Brachypodium distachyon
Bradi4g05560 10.0kb downstream 10.0kb downstream 10000 false Bd4: 4667320-4677319 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578640 5269 Grass View MSA
122043158 5273 Angiosperm View MSA
121344512 5274 Embryophyte View MSA
123423798 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.983        
cufflinks 22.832     High High
cufflinks 16.792     High  
cufflinks 21.407     High  
cufflinks 7.521        
cufflinks 17.791     High  
cufflinks 27.158     High High
cufflinks 12.899     High  
cufflinks 13.636     High  
cufflinks 15.785     High  
cufflinks 5.154       Low
cufflinks 8.176        
cufflinks 4.45       Low
cufflinks 4.619       Low
cufflinks 7.618        
cufflinks 18.232     High  
cufflinks 16.319     High  
cufflinks 14.399     High  
cufflinks 19.986     High  
cufflinks 2.827       Low
cufflinks 24.249     High High
cufflinks 11.394     High  
cufflinks 12.195     High  
cufflinks 13.547     High  
cufflinks 19.553     High  
cufflinks 16.939     High  
cufflinks 4.169       Low
cufflinks 15.305     High  
cufflinks 15.148     High  
cufflinks 21.12     High  

0 Strain