Gene : Bradi4g08800 B. distachyon v3.1
Defline:  (1 of 4) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  1161
Name:  ? Bradi4g08800 Secondary Identifier:  ? PAC:32786260
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CALVIN-PWY Brachypodium distachyon pathologic  
Bdistachyon PHOTOALL-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5723 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g08800 0.5kb upstream 0.5kb upstream 1722 true Bd4: 7952705-7954426 Brachypodium distachyon
Bradi4g08800 0.5kb upstream 0.5kb upstream 500 false Bd4: 7952705-7953204 Brachypodium distachyon
Bradi4g08800 0.5kb downstream 0.5kb downstream 1722 true Bd4: 7953205-7954926 Brachypodium distachyon
Bradi4g08800 0.5kb downstream 0.5kb downstream 500 false Bd4: 7954427-7954926 Brachypodium distachyon
Bradi4g08800 1.0kb upstream 1.0kb upstream 2222 true Bd4: 7952205-7954426 Brachypodium distachyon
Bradi4g08800 1.0kb upstream 1.0kb upstream 1000 false Bd4: 7952205-7953204 Brachypodium distachyon
Bradi4g08800 1.0kb downstream 1.0kb downstream 2222 true Bd4: 7953205-7955426 Brachypodium distachyon
Bradi4g08800 1.0kb downstream 1.0kb downstream 1000 false Bd4: 7954427-7955426 Brachypodium distachyon
Bradi4g08800 2.0kb upstream 2.0kb upstream 3222 true Bd4: 7951205-7954426 Brachypodium distachyon
Bradi4g08800 2.0kb upstream 2.0kb upstream 2000 false Bd4: 7951205-7953204 Brachypodium distachyon
Bradi4g08800 2.0kb downstream 2.0kb downstream 3222 true Bd4: 7953205-7956426 Brachypodium distachyon
Bradi4g08800 2.0kb downstream 2.0kb downstream 2000 false Bd4: 7954427-7956426 Brachypodium distachyon
Bradi4g08800 5.0kb upstream 5.0kb upstream 6222 true Bd4: 7948205-7954426 Brachypodium distachyon
Bradi4g08800 5.0kb upstream 5.0kb upstream 5000 false Bd4: 7948205-7953204 Brachypodium distachyon
Bradi4g08800 5.0kb downstream 5.0kb downstream 6222 true Bd4: 7953205-7959426 Brachypodium distachyon
Bradi4g08800 5.0kb downstream 5.0kb downstream 5000 false Bd4: 7954427-7959426 Brachypodium distachyon
Bradi4g08800 10.0kb upstream 10.0kb upstream 11222 true Bd4: 7943205-7954426 Brachypodium distachyon
Bradi4g08800 10.0kb upstream 10.0kb upstream 10000 false Bd4: 7943205-7953204 Brachypodium distachyon
Bradi4g08800 10.0kb downstream 10.0kb downstream 11222 true Bd4: 7953205-7964426 Brachypodium distachyon
Bradi4g08800 10.0kb downstream 10.0kb downstream 10000 false Bd4: 7954427-7964426 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590513 5269 Grass View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7917.708     High  
cufflinks 7631.661     High  
cufflinks 10281.19     High  
cufflinks 9850.358     High  
cufflinks 9163.802     High  
cufflinks 7342.183     High  
cufflinks 7493.159     High  
cufflinks 8590.229     High  
cufflinks 7155.775     High  
cufflinks 9417.337     High  
cufflinks 2763.464     High  
cufflinks 7211.046     High  
cufflinks 11036.218     High  
cufflinks 6104.748     High  
cufflinks 11405.343     High  
cufflinks 8497.19     High  
cufflinks 9421.908     High  
cufflinks 58.429     High Low
cufflinks 3457.25     High  
cufflinks 2247.877     High  
cufflinks 3838.276     High  
cufflinks 7156.94     High  
cufflinks 7640.068     High  
cufflinks 7458.966     High  
cufflinks 7094.727     High  
cufflinks 10982.921     High  
cufflinks 6342.542     High  
cufflinks 10287.731     High  
cufflinks 9857.664     High  
cufflinks 3398.026     High  

0 Strain