Gene : Bradi4g22150 B. distachyon v3.1
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  2818
Name:  ? Bradi4g22150 Secondary Identifier:  ? PAC:32787177
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-4361 Brachypodium distachyon pathologic  
Bdistachyon PWY-7270 Brachypodium distachyon pathologic  
Bdistachyon PWY-7528 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g22150 0.5kb upstream 0.5kb upstream 4532 true Bd4: 26117773-26122304 Brachypodium distachyon
Bradi4g22150 0.5kb upstream 0.5kb upstream 500 false Bd4: 26121805-26122304 Brachypodium distachyon
Bradi4g22150 0.5kb downstream 0.5kb downstream 4532 true Bd4: 26117273-26121804 Brachypodium distachyon
Bradi4g22150 0.5kb downstream 0.5kb downstream 500 false Bd4: 26117273-26117772 Brachypodium distachyon
Bradi4g22150 1.0kb upstream 1.0kb upstream 5032 true Bd4: 26117773-26122804 Brachypodium distachyon
Bradi4g22150 1.0kb upstream 1.0kb upstream 1000 false Bd4: 26121805-26122804 Brachypodium distachyon
Bradi4g22150 1.0kb downstream 1.0kb downstream 5032 true Bd4: 26116773-26121804 Brachypodium distachyon
Bradi4g22150 1.0kb downstream 1.0kb downstream 1000 false Bd4: 26116773-26117772 Brachypodium distachyon
Bradi4g22150 2.0kb upstream 2.0kb upstream 6032 true Bd4: 26117773-26123804 Brachypodium distachyon
Bradi4g22150 2.0kb upstream 2.0kb upstream 2000 false Bd4: 26121805-26123804 Brachypodium distachyon
Bradi4g22150 2.0kb downstream 2.0kb downstream 6032 true Bd4: 26115773-26121804 Brachypodium distachyon
Bradi4g22150 2.0kb downstream 2.0kb downstream 2000 false Bd4: 26115773-26117772 Brachypodium distachyon
Bradi4g22150 5.0kb upstream 5.0kb upstream 9032 true Bd4: 26117773-26126804 Brachypodium distachyon
Bradi4g22150 5.0kb upstream 5.0kb upstream 5000 false Bd4: 26121805-26126804 Brachypodium distachyon
Bradi4g22150 5.0kb downstream 5.0kb downstream 9032 true Bd4: 26112773-26121804 Brachypodium distachyon
Bradi4g22150 5.0kb downstream 5.0kb downstream 5000 false Bd4: 26112773-26117772 Brachypodium distachyon
Bradi4g22150 10.0kb upstream 10.0kb upstream 14032 true Bd4: 26117773-26131804 Brachypodium distachyon
Bradi4g22150 10.0kb upstream 10.0kb upstream 10000 false Bd4: 26121805-26131804 Brachypodium distachyon
Bradi4g22150 10.0kb downstream 10.0kb downstream 14032 true Bd4: 26107773-26121804 Brachypodium distachyon
Bradi4g22150 10.0kb downstream 10.0kb downstream 10000 false Bd4: 26107773-26117772 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569280 5269 Grass View MSA
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.835     High  
cufflinks 12.864     High  
cufflinks 10.72     High  
cufflinks 12.02     High  
cufflinks 11.862     High  
cufflinks 10.736     High  
cufflinks 12.281     High  
cufflinks 8.059        
cufflinks 9.003        
cufflinks 6.976       Low
cufflinks 9.046     High  
cufflinks 9.978     High  
cufflinks 8.898     High  
cufflinks 8.657     High  
cufflinks 9.795     High  
cufflinks 12.844     High  
cufflinks 11.828     High  
cufflinks 21.242     High High
cufflinks 10.061        
cufflinks 8.642        
cufflinks 15.838     High High
cufflinks 8.032        
cufflinks 7.462       Low
cufflinks 8.527        
cufflinks 8.873        
cufflinks 9.461        
cufflinks 8.435        
cufflinks 8.878        
cufflinks 8.144        
cufflinks 11.993     High  

0 Strain