Gene : Bradi4g16670 B. distachyon v3.1
Defline:  (1 of 13) 2.4.2.39 - Xyloglucan 6-xylosyltransferase / Xyloglucan 6-alpha-D-xylosyltransferase Genomic Order:  2235
Name:  ? Bradi4g16670 Secondary Identifier:  ? PAC:32787452
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5936 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g16670 0.5kb upstream 0.5kb upstream 2326 true Bd4: 17530210-17532535 Brachypodium distachyon
Bradi4g16670 0.5kb upstream 0.5kb upstream 500 false Bd4: 17532036-17532535 Brachypodium distachyon
Bradi4g16670 0.5kb downstream 0.5kb downstream 2326 true Bd4: 17529710-17532035 Brachypodium distachyon
Bradi4g16670 0.5kb downstream 0.5kb downstream 500 false Bd4: 17529710-17530209 Brachypodium distachyon
Bradi4g16670 1.0kb upstream 1.0kb upstream 2826 true Bd4: 17530210-17533035 Brachypodium distachyon
Bradi4g16670 1.0kb upstream 1.0kb upstream 1000 false Bd4: 17532036-17533035 Brachypodium distachyon
Bradi4g16670 1.0kb downstream 1.0kb downstream 2826 true Bd4: 17529210-17532035 Brachypodium distachyon
Bradi4g16670 1.0kb downstream 1.0kb downstream 1000 false Bd4: 17529210-17530209 Brachypodium distachyon
Bradi4g16670 2.0kb upstream 2.0kb upstream 3826 true Bd4: 17530210-17534035 Brachypodium distachyon
Bradi4g16670 2.0kb upstream 2.0kb upstream 2000 false Bd4: 17532036-17534035 Brachypodium distachyon
Bradi4g16670 2.0kb downstream 2.0kb downstream 3826 true Bd4: 17528210-17532035 Brachypodium distachyon
Bradi4g16670 2.0kb downstream 2.0kb downstream 2000 false Bd4: 17528210-17530209 Brachypodium distachyon
Bradi4g16670 5.0kb upstream 5.0kb upstream 6826 true Bd4: 17530210-17537035 Brachypodium distachyon
Bradi4g16670 5.0kb upstream 5.0kb upstream 5000 false Bd4: 17532036-17537035 Brachypodium distachyon
Bradi4g16670 5.0kb downstream 5.0kb downstream 6826 true Bd4: 17525210-17532035 Brachypodium distachyon
Bradi4g16670 5.0kb downstream 5.0kb downstream 5000 false Bd4: 17525210-17530209 Brachypodium distachyon
Bradi4g16670 10.0kb upstream 10.0kb upstream 11826 true Bd4: 17530210-17542035 Brachypodium distachyon
Bradi4g16670 10.0kb upstream 10.0kb upstream 10000 false Bd4: 17532036-17542035 Brachypodium distachyon
Bradi4g16670 10.0kb downstream 10.0kb downstream 11826 true Bd4: 17520210-17532035 Brachypodium distachyon
Bradi4g16670 10.0kb downstream 10.0kb downstream 10000 false Bd4: 17520210-17530209 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041044 5273 Angiosperm View MSA
124576790 5269 Grass View MSA
121352143 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.327        
cufflinks 0.265        
cufflinks 0.109        
cufflinks 0.269        
cufflinks 0.208        
cufflinks 0.249        
cufflinks 0.366        
cufflinks 0.156        
cufflinks 0.318        
cufflinks 0.052     Low  
cufflinks 0.009     Low Low
cufflinks 0.138        
cufflinks 0.008     Low Low
cufflinks 0.022     Low Low
cufflinks 0.02     Low Low
cufflinks 0.276        
cufflinks 0.761       High
cufflinks 1.483       High
cufflinks 0.403        
cufflinks 0.153        
cufflinks 0.583        
cufflinks 0.165        
cufflinks 0.238        
cufflinks 0.347        
cufflinks 0.331        
cufflinks 0.255        
cufflinks 0.013     Low Low
cufflinks 0.14        
cufflinks 0.103     Low  
cufflinks 0.429        

0 Strain