Gene : Bradi4g12260 B. distachyon v3.1
Defline:  (1 of 1) KOG0120//KOG0131 - Splicing factor U2AF, large subunit (RRM superfamily) // Splicing factor 3b, subunit 4 Genomic Order:  1672
Name:  ? Bradi4g12260 Secondary Identifier:  ? PAC:32788064
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g12260 0.5kb upstream 0.5kb upstream 6349 true Bd4: 12304644-12310992 Brachypodium distachyon
Bradi4g12260 0.5kb upstream 0.5kb upstream 500 false Bd4: 12304644-12305143 Brachypodium distachyon
Bradi4g12260 0.5kb downstream 0.5kb downstream 6349 true Bd4: 12305144-12311492 Brachypodium distachyon
Bradi4g12260 0.5kb downstream 0.5kb downstream 500 false Bd4: 12310993-12311492 Brachypodium distachyon
Bradi4g12260 1.0kb upstream 1.0kb upstream 6849 true Bd4: 12304144-12310992 Brachypodium distachyon
Bradi4g12260 1.0kb upstream 1.0kb upstream 1000 false Bd4: 12304144-12305143 Brachypodium distachyon
Bradi4g12260 1.0kb downstream 1.0kb downstream 6849 true Bd4: 12305144-12311992 Brachypodium distachyon
Bradi4g12260 1.0kb downstream 1.0kb downstream 1000 false Bd4: 12310993-12311992 Brachypodium distachyon
Bradi4g12260 2.0kb upstream 2.0kb upstream 7849 true Bd4: 12303144-12310992 Brachypodium distachyon
Bradi4g12260 2.0kb upstream 2.0kb upstream 2000 false Bd4: 12303144-12305143 Brachypodium distachyon
Bradi4g12260 2.0kb downstream 2.0kb downstream 7849 true Bd4: 12305144-12312992 Brachypodium distachyon
Bradi4g12260 2.0kb downstream 2.0kb downstream 2000 false Bd4: 12310993-12312992 Brachypodium distachyon
Bradi4g12260 5.0kb upstream 5.0kb upstream 10849 true Bd4: 12300144-12310992 Brachypodium distachyon
Bradi4g12260 5.0kb upstream 5.0kb upstream 5000 false Bd4: 12300144-12305143 Brachypodium distachyon
Bradi4g12260 5.0kb downstream 5.0kb downstream 10849 true Bd4: 12305144-12315992 Brachypodium distachyon
Bradi4g12260 5.0kb downstream 5.0kb downstream 5000 false Bd4: 12310993-12315992 Brachypodium distachyon
Bradi4g12260 10.0kb upstream 10.0kb upstream 15849 true Bd4: 12295144-12310992 Brachypodium distachyon
Bradi4g12260 10.0kb upstream 10.0kb upstream 10000 false Bd4: 12295144-12305143 Brachypodium distachyon
Bradi4g12260 10.0kb downstream 10.0kb downstream 15849 true Bd4: 12305144-12320992 Brachypodium distachyon
Bradi4g12260 10.0kb downstream 10.0kb downstream 10000 false Bd4: 12310993-12320992 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583459 5269 Grass View MSA
122050030 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349493 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.548       Low
cufflinks 3.56       High
cufflinks 3.299        
cufflinks 2.862        
cufflinks 1.606       Low
cufflinks 2.954        
cufflinks 2.917        
cufflinks 2.458        
cufflinks 3.072        
cufflinks 2.055        
cufflinks 2.286        
cufflinks 2.656        
cufflinks 2.011        
cufflinks 1.885        
cufflinks 1.448       Low
cufflinks 2.965        
cufflinks 2.231        
cufflinks 3.869       High
cufflinks 2.853        
cufflinks 1.43       Low
cufflinks 2.267        
cufflinks 3.478       High
cufflinks 2.353        
cufflinks 2.376        
cufflinks 2.584        
cufflinks 3.033        
cufflinks 2.476        
cufflinks 3.15        
cufflinks 2.97        
cufflinks 2.915        

0 Strain