Gene : Bradi4g14080 B. distachyon v3.1
Defline:  (1 of 421) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1929
Name:  ? Bradi4g14080 Secondary Identifier:  ? PAC:32787081
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g14080 0.5kb upstream 0.5kb upstream 2774 true Bd4: 14586528-14589301 Brachypodium distachyon
Bradi4g14080 0.5kb upstream 0.5kb upstream 500 false Bd4: 14588802-14589301 Brachypodium distachyon
Bradi4g14080 0.5kb downstream 0.5kb downstream 2774 true Bd4: 14586028-14588801 Brachypodium distachyon
Bradi4g14080 0.5kb downstream 0.5kb downstream 500 false Bd4: 14586028-14586527 Brachypodium distachyon
Bradi4g14080 1.0kb upstream 1.0kb upstream 3274 true Bd4: 14586528-14589801 Brachypodium distachyon
Bradi4g14080 1.0kb upstream 1.0kb upstream 1000 false Bd4: 14588802-14589801 Brachypodium distachyon
Bradi4g14080 1.0kb downstream 1.0kb downstream 3274 true Bd4: 14585528-14588801 Brachypodium distachyon
Bradi4g14080 1.0kb downstream 1.0kb downstream 1000 false Bd4: 14585528-14586527 Brachypodium distachyon
Bradi4g14080 2.0kb upstream 2.0kb upstream 4274 true Bd4: 14586528-14590801 Brachypodium distachyon
Bradi4g14080 2.0kb upstream 2.0kb upstream 2000 false Bd4: 14588802-14590801 Brachypodium distachyon
Bradi4g14080 2.0kb downstream 2.0kb downstream 4274 true Bd4: 14584528-14588801 Brachypodium distachyon
Bradi4g14080 2.0kb downstream 2.0kb downstream 2000 false Bd4: 14584528-14586527 Brachypodium distachyon
Bradi4g14080 5.0kb upstream 5.0kb upstream 7274 true Bd4: 14586528-14593801 Brachypodium distachyon
Bradi4g14080 5.0kb upstream 5.0kb upstream 5000 false Bd4: 14588802-14593801 Brachypodium distachyon
Bradi4g14080 5.0kb downstream 5.0kb downstream 7274 true Bd4: 14581528-14588801 Brachypodium distachyon
Bradi4g14080 5.0kb downstream 5.0kb downstream 5000 false Bd4: 14581528-14586527 Brachypodium distachyon
Bradi4g14080 10.0kb upstream 10.0kb upstream 12274 true Bd4: 14586528-14598801 Brachypodium distachyon
Bradi4g14080 10.0kb upstream 10.0kb upstream 10000 false Bd4: 14588802-14598801 Brachypodium distachyon
Bradi4g14080 10.0kb downstream 10.0kb downstream 12274 true Bd4: 14576528-14588801 Brachypodium distachyon
Bradi4g14080 10.0kb downstream 10.0kb downstream 10000 false Bd4: 14576528-14586527 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571343 5269 Grass View MSA
122045784 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.39     High  
cufflinks 31.004     High High
cufflinks 21.147     High  
cufflinks 29.057     High High
cufflinks 3.999       Low
cufflinks 23.288     High  
cufflinks 23.319     High  
cufflinks 16.479     High  
cufflinks 18.767     High  
cufflinks 12.582     High  
cufflinks 6.26        
cufflinks 19.083     High  
cufflinks 9.872     High  
cufflinks 9.446     High  
cufflinks 12.916     High  
cufflinks 24.552     High  
cufflinks 9.592        
cufflinks 3.76       Low
cufflinks 2.901       Low
cufflinks 1.271       Low
cufflinks 9.18        
cufflinks 18.77     High  
cufflinks 14.944     High  
cufflinks 19.145     High  
cufflinks 21.558     High  
cufflinks 19.207     High  
cufflinks 8.328        
cufflinks 17.222     High  
cufflinks 20.005     High  
cufflinks 21.622     High  

0 Strain