Gene : Pp3c13_11970 P. patens v3.3
Genomic Order:  487 Name:  ? Pp3c13_11970
Secondary Identifier:  ? PAC:32929952
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_11970 0.5kb upstream 0.5kb upstream 1199 true Chr13: 8803655-8804853 Physcomitrium patens
Pp3c13_11970 0.5kb upstream 0.5kb upstream 500 false Chr13: 8803655-8804154 Physcomitrium patens
Pp3c13_11970 0.5kb downstream 0.5kb downstream 1199 true Chr13: 8804155-8805353 Physcomitrium patens
Pp3c13_11970 0.5kb downstream 0.5kb downstream 500 false Chr13: 8804854-8805353 Physcomitrium patens
Pp3c13_11970 1.0kb upstream 1.0kb upstream 1699 true Chr13: 8803155-8804853 Physcomitrium patens
Pp3c13_11970 1.0kb upstream 1.0kb upstream 1000 false Chr13: 8803155-8804154 Physcomitrium patens
Pp3c13_11970 1.0kb downstream 1.0kb downstream 1699 true Chr13: 8804155-8805853 Physcomitrium patens
Pp3c13_11970 1.0kb downstream 1.0kb downstream 1000 false Chr13: 8804854-8805853 Physcomitrium patens
Pp3c13_11970 2.0kb upstream 2.0kb upstream 2699 true Chr13: 8802155-8804853 Physcomitrium patens
Pp3c13_11970 2.0kb upstream 2.0kb upstream 2000 false Chr13: 8802155-8804154 Physcomitrium patens
Pp3c13_11970 2.0kb downstream 2.0kb downstream 2699 true Chr13: 8804155-8806853 Physcomitrium patens
Pp3c13_11970 2.0kb downstream 2.0kb downstream 2000 false Chr13: 8804854-8806853 Physcomitrium patens
Pp3c13_11970 5.0kb upstream 5.0kb upstream 5699 true Chr13: 8799155-8804853 Physcomitrium patens
Pp3c13_11970 5.0kb upstream 5.0kb upstream 5000 false Chr13: 8799155-8804154 Physcomitrium patens
Pp3c13_11970 5.0kb downstream 5.0kb downstream 5699 true Chr13: 8804155-8809853 Physcomitrium patens
Pp3c13_11970 5.0kb downstream 5.0kb downstream 5000 false Chr13: 8804854-8809853 Physcomitrium patens
Pp3c13_11970 10.0kb upstream 10.0kb upstream 10699 true Chr13: 8794155-8804853 Physcomitrium patens
Pp3c13_11970 10.0kb upstream 10.0kb upstream 10000 false Chr13: 8794155-8804154 Physcomitrium patens
Pp3c13_11970 10.0kb downstream 10.0kb downstream 10699 true Chr13: 8804155-8814853 Physcomitrium patens
Pp3c13_11970 10.0kb downstream 10.0kb downstream 10000 false Chr13: 8804854-8814853 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121328886 5274 Embryophyte Singleton cluster - no MSA
123365882 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.795       Low
cufflinks 8.783        
cufflinks 15.865        
cufflinks 8.774        
cufflinks 5.884       Low
cufflinks 7.508        
cufflinks 14.377        
cufflinks 17.121       High
cufflinks 10.437        
cufflinks 15.249        
cufflinks 8.222        
cufflinks 11.876        
cufflinks 8.962        
cufflinks 14.436        
cufflinks 14.283        
cufflinks 18.152       High
cufflinks 14.947        
cufflinks 4.182       Low
cufflinks 11.807        
cufflinks 13.543        
cufflinks 11.38        
cufflinks 5.371       Low
cufflinks 7.435        
cufflinks 15.032        
cufflinks 13.594        
cufflinks 12.931        
cufflinks 7.481        
cufflinks 6.35       Low
cufflinks 11.568        
cufflinks 26.51     High High

0 Strain