Gene : Pp3c13_1340 P. patens v3.3
Defline:  (1 of 1) KOG3102 - Uncharacterized conserved protein Genomic Order:  48
Name:  ? Pp3c13_1340 Secondary Identifier:  ? PAC:32931929
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_1340 0.5kb upstream 0.5kb upstream 4531 true Chr13: 734371-738901 Physcomitrium patens
Pp3c13_1340 0.5kb upstream 0.5kb upstream 500 false Chr13: 738402-738901 Physcomitrium patens
Pp3c13_1340 0.5kb downstream 0.5kb downstream 4531 true Chr13: 733871-738401 Physcomitrium patens
Pp3c13_1340 0.5kb downstream 0.5kb downstream 500 false Chr13: 733871-734370 Physcomitrium patens
Pp3c13_1340 1.0kb upstream 1.0kb upstream 5031 true Chr13: 734371-739401 Physcomitrium patens
Pp3c13_1340 1.0kb upstream 1.0kb upstream 1000 false Chr13: 738402-739401 Physcomitrium patens
Pp3c13_1340 1.0kb downstream 1.0kb downstream 5031 true Chr13: 733371-738401 Physcomitrium patens
Pp3c13_1340 1.0kb downstream 1.0kb downstream 1000 false Chr13: 733371-734370 Physcomitrium patens
Pp3c13_1340 2.0kb upstream 2.0kb upstream 6031 true Chr13: 734371-740401 Physcomitrium patens
Pp3c13_1340 2.0kb upstream 2.0kb upstream 2000 false Chr13: 738402-740401 Physcomitrium patens
Pp3c13_1340 2.0kb downstream 2.0kb downstream 6031 true Chr13: 732371-738401 Physcomitrium patens
Pp3c13_1340 2.0kb downstream 2.0kb downstream 2000 false Chr13: 732371-734370 Physcomitrium patens
Pp3c13_1340 5.0kb upstream 5.0kb upstream 9031 true Chr13: 734371-743401 Physcomitrium patens
Pp3c13_1340 5.0kb upstream 5.0kb upstream 5000 false Chr13: 738402-743401 Physcomitrium patens
Pp3c13_1340 5.0kb downstream 5.0kb downstream 9031 true Chr13: 729371-738401 Physcomitrium patens
Pp3c13_1340 5.0kb downstream 5.0kb downstream 5000 false Chr13: 729371-734370 Physcomitrium patens
Pp3c13_1340 10.0kb upstream 10.0kb upstream 14031 true Chr13: 734371-748401 Physcomitrium patens
Pp3c13_1340 10.0kb upstream 10.0kb upstream 10000 false Chr13: 738402-748401 Physcomitrium patens
Pp3c13_1340 10.0kb downstream 10.0kb downstream 14031 true Chr13: 724371-738401 Physcomitrium patens
Pp3c13_1340 10.0kb downstream 10.0kb downstream 10000 false Chr13: 724371-734370 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429042 5275 Viridiplantae View MSA
121344227 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.849       Low
cufflinks 5.32       Low
cufflinks 16.142        
cufflinks 14.851        
cufflinks 20.854       High
cufflinks 17.76        
cufflinks 15.966        
cufflinks 18.649     High  
cufflinks 16.603        
cufflinks 21.228       High
cufflinks 15.624     High  
cufflinks 16.434        
cufflinks 14.789        
cufflinks 19.192     High  
cufflinks 9.622       Low
cufflinks 13.289        
cufflinks 12.897        
cufflinks 14.581        
cufflinks 14.898        
cufflinks 17.815        
cufflinks 15.719     High  
cufflinks 12.698        
cufflinks 14.539        
cufflinks 22.737     High High
cufflinks 15.586        
cufflinks 19.501        
cufflinks 16.411        
cufflinks 22.672     High High
cufflinks 10.704       Low
cufflinks 16.245        

0 Strain