Gene : Pp3c13_14910 P. patens v3.3
Defline:  (1 of 25) PF06985 - Heterokaryon incompatibility protein (HET) (HET) Genomic Order:  629
Name:  ? Pp3c13_14910 Secondary Identifier:  ? PAC:32932341
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_14910 0.5kb upstream 0.5kb upstream 3743 true Chr13: 10879154-10882896 Physcomitrium patens
Pp3c13_14910 0.5kb upstream 0.5kb upstream 500 false Chr13: 10879154-10879653 Physcomitrium patens
Pp3c13_14910 0.5kb downstream 0.5kb downstream 3743 true Chr13: 10879654-10883396 Physcomitrium patens
Pp3c13_14910 0.5kb downstream 0.5kb downstream 500 false Chr13: 10882897-10883396 Physcomitrium patens
Pp3c13_14910 1.0kb upstream 1.0kb upstream 4243 true Chr13: 10878654-10882896 Physcomitrium patens
Pp3c13_14910 1.0kb upstream 1.0kb upstream 1000 false Chr13: 10878654-10879653 Physcomitrium patens
Pp3c13_14910 1.0kb downstream 1.0kb downstream 4243 true Chr13: 10879654-10883896 Physcomitrium patens
Pp3c13_14910 1.0kb downstream 1.0kb downstream 1000 false Chr13: 10882897-10883896 Physcomitrium patens
Pp3c13_14910 2.0kb upstream 2.0kb upstream 5243 true Chr13: 10877654-10882896 Physcomitrium patens
Pp3c13_14910 2.0kb upstream 2.0kb upstream 2000 false Chr13: 10877654-10879653 Physcomitrium patens
Pp3c13_14910 2.0kb downstream 2.0kb downstream 5243 true Chr13: 10879654-10884896 Physcomitrium patens
Pp3c13_14910 2.0kb downstream 2.0kb downstream 2000 false Chr13: 10882897-10884896 Physcomitrium patens
Pp3c13_14910 5.0kb upstream 5.0kb upstream 8243 true Chr13: 10874654-10882896 Physcomitrium patens
Pp3c13_14910 5.0kb upstream 5.0kb upstream 5000 false Chr13: 10874654-10879653 Physcomitrium patens
Pp3c13_14910 5.0kb downstream 5.0kb downstream 8243 true Chr13: 10879654-10887896 Physcomitrium patens
Pp3c13_14910 5.0kb downstream 5.0kb downstream 5000 false Chr13: 10882897-10887896 Physcomitrium patens
Pp3c13_14910 10.0kb upstream 10.0kb upstream 13243 true Chr13: 10869654-10882896 Physcomitrium patens
Pp3c13_14910 10.0kb upstream 10.0kb upstream 10000 false Chr13: 10869654-10879653 Physcomitrium patens
Pp3c13_14910 10.0kb downstream 10.0kb downstream 13243 true Chr13: 10879654-10892896 Physcomitrium patens
Pp3c13_14910 10.0kb downstream 10.0kb downstream 10000 false Chr13: 10882897-10892896 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121329201 5274 Embryophyte Singleton cluster - no MSA
123366193 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.441        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.221        
cufflinks 29.502     High High
cufflinks 0.127       Low
cufflinks 10.542        
cufflinks 2.997        
cufflinks 0.063     Low Low
cufflinks 2.44        
cufflinks 3.447        
cufflinks 0.347       Low
cufflinks 5.675        
cufflinks 2.771        
cufflinks 20.873       High
cufflinks 11.815        
cufflinks 0.852        
cufflinks 1.405        
cufflinks 14.123       High
cufflinks 1.285        
cufflinks 0.649        
cufflinks 14.507       High
cufflinks 28.032     High High
cufflinks 3.619        
cufflinks 0.89        
cufflinks 1.855        
cufflinks 27.06     High High
cufflinks 1.922        
cufflinks 0.449       Low
cufflinks 25.124     High High
cufflinks 4.353        

0 Strain