Gene : Pp3c12_13020 P. patens v3.3
Defline:  (1 of 34) PF03195 - Protein of unknown function DUF260 (DUF260) Genomic Order:  579
Name:  ? Pp3c12_13020 Secondary Identifier:  ? PAC:32973501
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_13020 0.5kb upstream 0.5kb upstream 6527 true Chr12: 8736116-8742642 Physcomitrium patens
Pp3c12_13020 0.5kb upstream 0.5kb upstream 500 false Chr12: 8742143-8742642 Physcomitrium patens
Pp3c12_13020 0.5kb downstream 0.5kb downstream 6527 true Chr12: 8735616-8742142 Physcomitrium patens
Pp3c12_13020 0.5kb downstream 0.5kb downstream 500 false Chr12: 8735616-8736115 Physcomitrium patens
Pp3c12_13020 1.0kb upstream 1.0kb upstream 7027 true Chr12: 8736116-8743142 Physcomitrium patens
Pp3c12_13020 1.0kb upstream 1.0kb upstream 1000 false Chr12: 8742143-8743142 Physcomitrium patens
Pp3c12_13020 1.0kb downstream 1.0kb downstream 7027 true Chr12: 8735116-8742142 Physcomitrium patens
Pp3c12_13020 1.0kb downstream 1.0kb downstream 1000 false Chr12: 8735116-8736115 Physcomitrium patens
Pp3c12_13020 2.0kb upstream 2.0kb upstream 8027 true Chr12: 8736116-8744142 Physcomitrium patens
Pp3c12_13020 2.0kb upstream 2.0kb upstream 2000 false Chr12: 8742143-8744142 Physcomitrium patens
Pp3c12_13020 2.0kb downstream 2.0kb downstream 8027 true Chr12: 8734116-8742142 Physcomitrium patens
Pp3c12_13020 2.0kb downstream 2.0kb downstream 2000 false Chr12: 8734116-8736115 Physcomitrium patens
Pp3c12_13020 5.0kb upstream 5.0kb upstream 11027 true Chr12: 8736116-8747142 Physcomitrium patens
Pp3c12_13020 5.0kb upstream 5.0kb upstream 5000 false Chr12: 8742143-8747142 Physcomitrium patens
Pp3c12_13020 5.0kb downstream 5.0kb downstream 11027 true Chr12: 8731116-8742142 Physcomitrium patens
Pp3c12_13020 5.0kb downstream 5.0kb downstream 5000 false Chr12: 8731116-8736115 Physcomitrium patens
Pp3c12_13020 10.0kb upstream 10.0kb upstream 16027 true Chr12: 8736116-8752142 Physcomitrium patens
Pp3c12_13020 10.0kb upstream 10.0kb upstream 10000 false Chr12: 8742143-8752142 Physcomitrium patens
Pp3c12_13020 10.0kb downstream 10.0kb downstream 16027 true Chr12: 8726116-8742142 Physcomitrium patens
Pp3c12_13020 10.0kb downstream 10.0kb downstream 10000 false Chr12: 8726116-8736115 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351593 5274 Embryophyte View MSA
123382239 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.534       High
cufflinks 1.337        
cufflinks 1.281        
cufflinks 0.731        
cufflinks 0.062       Low
cufflinks 0.725        
cufflinks 0.04     Low Low
cufflinks 0.522        
cufflinks 0.043     Low Low
cufflinks 1.452        
cufflinks 0.554        
cufflinks 0.337        
cufflinks 1.846       High
cufflinks 1.002        
cufflinks 0.079     Low Low
cufflinks 0.648        
cufflinks 1.011        
cufflinks 1.144        
cufflinks 0.708        
cufflinks 0.386        
cufflinks 0.191        
cufflinks 1.369        
cufflinks 1.115        
cufflinks 1.136        
cufflinks 0.258        
cufflinks 0.259        
cufflinks 0.265        
cufflinks 0.622        
cufflinks 1.087        
cufflinks 0.466        

0 Strain