Gene : Pp3c13_19460 P. patens v3.3
Defline:  (1 of 3) PTHR12403 - MBP-1 INTERACTING PROTEIN-2A Genomic Order:  816
Name:  ? Pp3c13_19460 Secondary Identifier:  ? PAC:32931775
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_19460 0.5kb upstream 0.5kb upstream 3015 true Chr13: 13905464-13908478 Physcomitrium patens
Pp3c13_19460 0.5kb upstream 0.5kb upstream 500 false Chr13: 13907979-13908478 Physcomitrium patens
Pp3c13_19460 0.5kb downstream 0.5kb downstream 3015 true Chr13: 13904964-13907978 Physcomitrium patens
Pp3c13_19460 0.5kb downstream 0.5kb downstream 500 false Chr13: 13904964-13905463 Physcomitrium patens
Pp3c13_19460 1.0kb upstream 1.0kb upstream 3515 true Chr13: 13905464-13908978 Physcomitrium patens
Pp3c13_19460 1.0kb upstream 1.0kb upstream 1000 false Chr13: 13907979-13908978 Physcomitrium patens
Pp3c13_19460 1.0kb downstream 1.0kb downstream 3515 true Chr13: 13904464-13907978 Physcomitrium patens
Pp3c13_19460 1.0kb downstream 1.0kb downstream 1000 false Chr13: 13904464-13905463 Physcomitrium patens
Pp3c13_19460 2.0kb upstream 2.0kb upstream 4515 true Chr13: 13905464-13909978 Physcomitrium patens
Pp3c13_19460 2.0kb upstream 2.0kb upstream 2000 false Chr13: 13907979-13909978 Physcomitrium patens
Pp3c13_19460 2.0kb downstream 2.0kb downstream 4515 true Chr13: 13903464-13907978 Physcomitrium patens
Pp3c13_19460 2.0kb downstream 2.0kb downstream 2000 false Chr13: 13903464-13905463 Physcomitrium patens
Pp3c13_19460 5.0kb upstream 5.0kb upstream 7515 true Chr13: 13905464-13912978 Physcomitrium patens
Pp3c13_19460 5.0kb upstream 5.0kb upstream 5000 false Chr13: 13907979-13912978 Physcomitrium patens
Pp3c13_19460 5.0kb downstream 5.0kb downstream 7515 true Chr13: 13900464-13907978 Physcomitrium patens
Pp3c13_19460 5.0kb downstream 5.0kb downstream 5000 false Chr13: 13900464-13905463 Physcomitrium patens
Pp3c13_19460 10.0kb upstream 10.0kb upstream 12515 true Chr13: 13905464-13917978 Physcomitrium patens
Pp3c13_19460 10.0kb upstream 10.0kb upstream 10000 false Chr13: 13907979-13917978 Physcomitrium patens
Pp3c13_19460 10.0kb downstream 10.0kb downstream 12515 true Chr13: 13895464-13907978 Physcomitrium patens
Pp3c13_19460 10.0kb downstream 10.0kb downstream 10000 false Chr13: 13895464-13905463 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344842 5274 Embryophyte View MSA
123424203 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.162        
cufflinks 0.789       Low
cufflinks 1.051        
cufflinks 1.18        
cufflinks 1.792       High
cufflinks 1.441        
cufflinks 1.313        
cufflinks 1.415        
cufflinks 0.918       Low
cufflinks 1.499        
cufflinks 1.405        
cufflinks 1.83       High
cufflinks 1.435        
cufflinks 0.886       Low
cufflinks 1.142        
cufflinks 1.786       High
cufflinks 1.82       High
cufflinks 1.502        
cufflinks 1.118        
cufflinks 1.049        
cufflinks 0.975       Low
cufflinks 1.381        
cufflinks 1.447        
cufflinks 1.076        
cufflinks 0.869       Low
cufflinks 1.386        
cufflinks 1.288        
cufflinks 0.724       Low
cufflinks 1.316        
cufflinks 1.307        

0 Strain