Gene : Pp3c13_23590 P. patens v3.3
Defline:  (1 of 6) KOG4249 - Uncharacterized conserved protein Genomic Order:  1017
Name:  ? Pp3c13_23590 Secondary Identifier:  ? PAC:32930890
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_23590 0.5kb upstream 0.5kb upstream 7741 true Chr13: 16516951-16524691 Physcomitrium patens
Pp3c13_23590 0.5kb upstream 0.5kb upstream 500 false Chr13: 16516951-16517450 Physcomitrium patens
Pp3c13_23590 0.5kb downstream 0.5kb downstream 7741 true Chr13: 16517451-16525191 Physcomitrium patens
Pp3c13_23590 0.5kb downstream 0.5kb downstream 500 false Chr13: 16524692-16525191 Physcomitrium patens
Pp3c13_23590 1.0kb upstream 1.0kb upstream 8241 true Chr13: 16516451-16524691 Physcomitrium patens
Pp3c13_23590 1.0kb upstream 1.0kb upstream 1000 false Chr13: 16516451-16517450 Physcomitrium patens
Pp3c13_23590 1.0kb downstream 1.0kb downstream 8241 true Chr13: 16517451-16525691 Physcomitrium patens
Pp3c13_23590 1.0kb downstream 1.0kb downstream 1000 false Chr13: 16524692-16525691 Physcomitrium patens
Pp3c13_23590 2.0kb upstream 2.0kb upstream 9241 true Chr13: 16515451-16524691 Physcomitrium patens
Pp3c13_23590 2.0kb upstream 2.0kb upstream 2000 false Chr13: 16515451-16517450 Physcomitrium patens
Pp3c13_23590 2.0kb downstream 2.0kb downstream 9241 true Chr13: 16517451-16526691 Physcomitrium patens
Pp3c13_23590 2.0kb downstream 2.0kb downstream 2000 false Chr13: 16524692-16526691 Physcomitrium patens
Pp3c13_23590 5.0kb upstream 5.0kb upstream 12241 true Chr13: 16512451-16524691 Physcomitrium patens
Pp3c13_23590 5.0kb upstream 5.0kb upstream 5000 false Chr13: 16512451-16517450 Physcomitrium patens
Pp3c13_23590 5.0kb downstream 5.0kb downstream 12241 true Chr13: 16517451-16529691 Physcomitrium patens
Pp3c13_23590 5.0kb downstream 5.0kb downstream 5000 false Chr13: 16524692-16529691 Physcomitrium patens
Pp3c13_23590 10.0kb upstream 10.0kb upstream 17241 true Chr13: 16507451-16524691 Physcomitrium patens
Pp3c13_23590 10.0kb upstream 10.0kb upstream 10000 false Chr13: 16507451-16517450 Physcomitrium patens
Pp3c13_23590 10.0kb downstream 10.0kb downstream 17241 true Chr13: 16517451-16534691 Physcomitrium patens
Pp3c13_23590 10.0kb downstream 10.0kb downstream 10000 false Chr13: 16524692-16534691 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347717 5274 Embryophyte View MSA
123428813 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.465       Low
cufflinks 61.244     High High
cufflinks 44.733     High  
cufflinks 16.846       Low
cufflinks 13.886     High Low
cufflinks 30.777     High  
cufflinks 43.798     High  
cufflinks 53.844     High High
cufflinks 35.154     High  
cufflinks 13.592     High Low
cufflinks 40.485     High  
cufflinks 36.673     High  
cufflinks 42.355     High  
cufflinks 24.249     High  
cufflinks 41.556     High  
cufflinks 35.702     High  
cufflinks 50.426     High High
cufflinks 24.427     High  
cufflinks 49.402     High High
cufflinks 32.963     High  
cufflinks 38.767     High  
cufflinks 24.74     High  
cufflinks 40.838     High  
cufflinks 16.807       Low
cufflinks 26.476     High  
cufflinks 22.733     High  
cufflinks 26.434     High  
cufflinks 48.969     High High
cufflinks 30.65     High  
cufflinks 28.18     High  

0 Strain