Gene : Pp3c13_9460 P. patens v3.3
Defline:  (1 of 7) PF00487//PF11960 - Fatty acid desaturase (FA_desaturase) // Domain of unknown function (DUF3474) (DUF3474) Genomic Order:  406
Name:  ? Pp3c13_9460 Secondary Identifier:  ? PAC:32932574
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_9460 0.5kb upstream 0.5kb upstream 2354 true Chr13: 6500537-6502890 Physcomitrium patens
Pp3c13_9460 0.5kb upstream 0.5kb upstream 500 false Chr13: 6502391-6502890 Physcomitrium patens
Pp3c13_9460 0.5kb downstream 0.5kb downstream 2354 true Chr13: 6500037-6502390 Physcomitrium patens
Pp3c13_9460 0.5kb downstream 0.5kb downstream 500 false Chr13: 6500037-6500536 Physcomitrium patens
Pp3c13_9460 1.0kb upstream 1.0kb upstream 2854 true Chr13: 6500537-6503390 Physcomitrium patens
Pp3c13_9460 1.0kb upstream 1.0kb upstream 1000 false Chr13: 6502391-6503390 Physcomitrium patens
Pp3c13_9460 1.0kb downstream 1.0kb downstream 2854 true Chr13: 6499537-6502390 Physcomitrium patens
Pp3c13_9460 1.0kb downstream 1.0kb downstream 1000 false Chr13: 6499537-6500536 Physcomitrium patens
Pp3c13_9460 2.0kb upstream 2.0kb upstream 3854 true Chr13: 6500537-6504390 Physcomitrium patens
Pp3c13_9460 2.0kb upstream 2.0kb upstream 2000 false Chr13: 6502391-6504390 Physcomitrium patens
Pp3c13_9460 2.0kb downstream 2.0kb downstream 3854 true Chr13: 6498537-6502390 Physcomitrium patens
Pp3c13_9460 2.0kb downstream 2.0kb downstream 2000 false Chr13: 6498537-6500536 Physcomitrium patens
Pp3c13_9460 5.0kb upstream 5.0kb upstream 6854 true Chr13: 6500537-6507390 Physcomitrium patens
Pp3c13_9460 5.0kb upstream 5.0kb upstream 5000 false Chr13: 6502391-6507390 Physcomitrium patens
Pp3c13_9460 5.0kb downstream 5.0kb downstream 6854 true Chr13: 6495537-6502390 Physcomitrium patens
Pp3c13_9460 5.0kb downstream 5.0kb downstream 5000 false Chr13: 6495537-6500536 Physcomitrium patens
Pp3c13_9460 10.0kb upstream 10.0kb upstream 11854 true Chr13: 6500537-6512390 Physcomitrium patens
Pp3c13_9460 10.0kb upstream 10.0kb upstream 10000 false Chr13: 6502391-6512390 Physcomitrium patens
Pp3c13_9460 10.0kb downstream 10.0kb downstream 11854 true Chr13: 6490537-6502390 Physcomitrium patens
Pp3c13_9460 10.0kb downstream 10.0kb downstream 10000 false Chr13: 6490537-6500536 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351532 5274 Embryophyte View MSA
123426688 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.662       High
cufflinks 0.411        
cufflinks 0.518        
cufflinks 1.144       High
cufflinks 0.159        
cufflinks 0.059     Low  
cufflinks 0.214        
cufflinks 0.019     Low  
cufflinks 0.029     Low  
cufflinks 0.638       High
cufflinks 0.775       High
cufflinks 0.044     Low  
cufflinks 0.607       High
cufflinks 0.314        
cufflinks 0.001     Low Low
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.007     Low Low
cufflinks 0.008     Low Low
cufflinks 1.194       High
cufflinks 0.04     Low  
cufflinks 0.03     Low  
cufflinks 0.096        
cufflinks 0.391        
cufflinks 0.003     Low Low
cufflinks 0.095        
cufflinks 0.459        
cufflinks 0.211        
cufflinks 0.15        

0 Strain