Gene : Pp3c13_3400 P. patens v3.3
Defline:  (1 of 15) PTHR31161:SF2 - SEC1/MUNC18-LIKE (SM) FAMILY PROTEIN Genomic Order:  147
Name:  ? Pp3c13_3400 Secondary Identifier:  ? PAC:32931565
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_3400 0.5kb upstream 0.5kb upstream 2906 true Chr13: 1981429-1984334 Physcomitrium patens
Pp3c13_3400 0.5kb upstream 0.5kb upstream 500 false Chr13: 1981429-1981928 Physcomitrium patens
Pp3c13_3400 0.5kb downstream 0.5kb downstream 2906 true Chr13: 1981929-1984834 Physcomitrium patens
Pp3c13_3400 0.5kb downstream 0.5kb downstream 500 false Chr13: 1984335-1984834 Physcomitrium patens
Pp3c13_3400 1.0kb upstream 1.0kb upstream 3406 true Chr13: 1980929-1984334 Physcomitrium patens
Pp3c13_3400 1.0kb upstream 1.0kb upstream 1000 false Chr13: 1980929-1981928 Physcomitrium patens
Pp3c13_3400 1.0kb downstream 1.0kb downstream 3406 true Chr13: 1981929-1985334 Physcomitrium patens
Pp3c13_3400 1.0kb downstream 1.0kb downstream 1000 false Chr13: 1984335-1985334 Physcomitrium patens
Pp3c13_3400 2.0kb upstream 2.0kb upstream 4406 true Chr13: 1979929-1984334 Physcomitrium patens
Pp3c13_3400 2.0kb upstream 2.0kb upstream 2000 false Chr13: 1979929-1981928 Physcomitrium patens
Pp3c13_3400 2.0kb downstream 2.0kb downstream 4406 true Chr13: 1981929-1986334 Physcomitrium patens
Pp3c13_3400 2.0kb downstream 2.0kb downstream 2000 false Chr13: 1984335-1986334 Physcomitrium patens
Pp3c13_3400 5.0kb upstream 5.0kb upstream 7406 true Chr13: 1976929-1984334 Physcomitrium patens
Pp3c13_3400 5.0kb upstream 5.0kb upstream 5000 false Chr13: 1976929-1981928 Physcomitrium patens
Pp3c13_3400 5.0kb downstream 5.0kb downstream 7406 true Chr13: 1981929-1989334 Physcomitrium patens
Pp3c13_3400 5.0kb downstream 5.0kb downstream 5000 false Chr13: 1984335-1989334 Physcomitrium patens
Pp3c13_3400 10.0kb upstream 10.0kb upstream 12406 true Chr13: 1971929-1984334 Physcomitrium patens
Pp3c13_3400 10.0kb upstream 10.0kb upstream 10000 false Chr13: 1971929-1981928 Physcomitrium patens
Pp3c13_3400 10.0kb downstream 10.0kb downstream 12406 true Chr13: 1981929-1994334 Physcomitrium patens
Pp3c13_3400 10.0kb downstream 10.0kb downstream 10000 false Chr13: 1984335-1994334 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350566 5274 Embryophyte View MSA
123381797 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.008       High
cufflinks 0.934        
cufflinks 0.18        
cufflinks 0.112       Low
cufflinks 0.374        
cufflinks 0.414        
cufflinks 0.175        
cufflinks 0.141        
cufflinks 0.208        
cufflinks 0.21        
cufflinks 0.465        
cufflinks 0.201        
cufflinks 0.718        
cufflinks 0.183        
cufflinks 2.453        
cufflinks 0.592        
cufflinks 58.264     High High
cufflinks 0.227        
cufflinks 2.255        
cufflinks 0.222        
cufflinks 15.158     High High
cufflinks 0.12        
cufflinks 0.17        
cufflinks 1.722        
cufflinks 0.231        
cufflinks 0.334        
cufflinks 14.53     High High
cufflinks 1.311        
cufflinks 0.205        
cufflinks 0.186        

0 Strain