Gene : Pp3c14_12190 P. patens v3.3
Defline:  (1 of 15) PTHR31161:SF2 - SEC1/MUNC18-LIKE (SM) FAMILY PROTEIN Genomic Order:  622
Name:  ? Pp3c14_12190 Secondary Identifier:  ? PAC:32962038
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_12190 0.5kb upstream 0.5kb upstream 3753 true Chr14: 7769013-7772765 Physcomitrium patens
Pp3c14_12190 0.5kb upstream 0.5kb upstream 500 false Chr14: 7772266-7772765 Physcomitrium patens
Pp3c14_12190 0.5kb downstream 0.5kb downstream 3753 true Chr14: 7768513-7772265 Physcomitrium patens
Pp3c14_12190 0.5kb downstream 0.5kb downstream 500 false Chr14: 7768513-7769012 Physcomitrium patens
Pp3c14_12190 1.0kb upstream 1.0kb upstream 4253 true Chr14: 7769013-7773265 Physcomitrium patens
Pp3c14_12190 1.0kb upstream 1.0kb upstream 1000 false Chr14: 7772266-7773265 Physcomitrium patens
Pp3c14_12190 1.0kb downstream 1.0kb downstream 4253 true Chr14: 7768013-7772265 Physcomitrium patens
Pp3c14_12190 1.0kb downstream 1.0kb downstream 1000 false Chr14: 7768013-7769012 Physcomitrium patens
Pp3c14_12190 2.0kb upstream 2.0kb upstream 5253 true Chr14: 7769013-7774265 Physcomitrium patens
Pp3c14_12190 2.0kb upstream 2.0kb upstream 2000 false Chr14: 7772266-7774265 Physcomitrium patens
Pp3c14_12190 2.0kb downstream 2.0kb downstream 5253 true Chr14: 7767013-7772265 Physcomitrium patens
Pp3c14_12190 2.0kb downstream 2.0kb downstream 2000 false Chr14: 7767013-7769012 Physcomitrium patens
Pp3c14_12190 5.0kb upstream 5.0kb upstream 8253 true Chr14: 7769013-7777265 Physcomitrium patens
Pp3c14_12190 5.0kb upstream 5.0kb upstream 5000 false Chr14: 7772266-7777265 Physcomitrium patens
Pp3c14_12190 5.0kb downstream 5.0kb downstream 8253 true Chr14: 7764013-7772265 Physcomitrium patens
Pp3c14_12190 5.0kb downstream 5.0kb downstream 5000 false Chr14: 7764013-7769012 Physcomitrium patens
Pp3c14_12190 10.0kb upstream 10.0kb upstream 13253 true Chr14: 7769013-7782265 Physcomitrium patens
Pp3c14_12190 10.0kb upstream 10.0kb upstream 10000 false Chr14: 7772266-7782265 Physcomitrium patens
Pp3c14_12190 10.0kb downstream 10.0kb downstream 13253 true Chr14: 7759013-7772265 Physcomitrium patens
Pp3c14_12190 10.0kb downstream 10.0kb downstream 10000 false Chr14: 7759013-7769012 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121333113 5274 Embryophyte Singleton cluster - no MSA
123370011 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.826        
cufflinks 0.932       Low
cufflinks 4.43        
cufflinks 3.512        
cufflinks 11.895        
cufflinks 7.023        
cufflinks 2.04        
cufflinks 5.77        
cufflinks 8.765        
cufflinks 6.978        
cufflinks 16.335       High
cufflinks 10.354        
cufflinks 11.947        
cufflinks 3.848        
cufflinks 4.561        
cufflinks 3.58        
cufflinks 5.926        
cufflinks 10.443        
cufflinks 10.121        
cufflinks 13.813       High
cufflinks 0.368       Low
cufflinks 7.714        
cufflinks 10.367        
cufflinks 1.81       Low
cufflinks 0.372       Low
cufflinks 7.907        
cufflinks 6.949        
cufflinks 4.109        
cufflinks 11.601        
cufflinks 4.173        

0 Strain