Gene : Pp3c14_13390 P. patens v3.3
Defline:  (1 of 1) PTHR37733:SF1 - SMAD/FHA DOMAIN-CONTAINING PROTEIN Genomic Order:  679
Name:  ? Pp3c14_13390 Secondary Identifier:  ? PAC:32961173
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_13390 0.5kb upstream 0.5kb upstream 4731 true Chr14: 8532369-8537099 Physcomitrium patens
Pp3c14_13390 0.5kb upstream 0.5kb upstream 500 false Chr14: 8536600-8537099 Physcomitrium patens
Pp3c14_13390 0.5kb downstream 0.5kb downstream 4731 true Chr14: 8531869-8536599 Physcomitrium patens
Pp3c14_13390 0.5kb downstream 0.5kb downstream 500 false Chr14: 8531869-8532368 Physcomitrium patens
Pp3c14_13390 1.0kb upstream 1.0kb upstream 5231 true Chr14: 8532369-8537599 Physcomitrium patens
Pp3c14_13390 1.0kb upstream 1.0kb upstream 1000 false Chr14: 8536600-8537599 Physcomitrium patens
Pp3c14_13390 1.0kb downstream 1.0kb downstream 5231 true Chr14: 8531369-8536599 Physcomitrium patens
Pp3c14_13390 1.0kb downstream 1.0kb downstream 1000 false Chr14: 8531369-8532368 Physcomitrium patens
Pp3c14_13390 2.0kb upstream 2.0kb upstream 6231 true Chr14: 8532369-8538599 Physcomitrium patens
Pp3c14_13390 2.0kb upstream 2.0kb upstream 2000 false Chr14: 8536600-8538599 Physcomitrium patens
Pp3c14_13390 2.0kb downstream 2.0kb downstream 6231 true Chr14: 8530369-8536599 Physcomitrium patens
Pp3c14_13390 2.0kb downstream 2.0kb downstream 2000 false Chr14: 8530369-8532368 Physcomitrium patens
Pp3c14_13390 5.0kb upstream 5.0kb upstream 9231 true Chr14: 8532369-8541599 Physcomitrium patens
Pp3c14_13390 5.0kb upstream 5.0kb upstream 5000 false Chr14: 8536600-8541599 Physcomitrium patens
Pp3c14_13390 5.0kb downstream 5.0kb downstream 9231 true Chr14: 8527369-8536599 Physcomitrium patens
Pp3c14_13390 5.0kb downstream 5.0kb downstream 5000 false Chr14: 8527369-8532368 Physcomitrium patens
Pp3c14_13390 10.0kb upstream 10.0kb upstream 14231 true Chr14: 8532369-8546599 Physcomitrium patens
Pp3c14_13390 10.0kb upstream 10.0kb upstream 10000 false Chr14: 8536600-8546599 Physcomitrium patens
Pp3c14_13390 10.0kb downstream 10.0kb downstream 14231 true Chr14: 8522369-8536599 Physcomitrium patens
Pp3c14_13390 10.0kb downstream 10.0kb downstream 10000 false Chr14: 8522369-8532368 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121296349 5274 Embryophyte View MSA
123334528 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.596        
cufflinks 12.779       High
cufflinks 17.88       High
cufflinks 5.533        
cufflinks 5.162        
cufflinks 6.505        
cufflinks 8.195        
cufflinks 3.945        
cufflinks 12.498       High
cufflinks 3.982        
cufflinks 3.442        
cufflinks 4.575        
cufflinks 3.215        
cufflinks 1.821       Low
cufflinks 1.539       Low
cufflinks 5.664        
cufflinks 2.396        
cufflinks 0.625       Low
cufflinks 3.315        
cufflinks 6.138        
cufflinks 13.578       High
cufflinks 12.284       High
cufflinks 12.165       High
cufflinks 8.977        
cufflinks 11.037        
cufflinks 8.568        
cufflinks 6.722        
cufflinks 1.895       Low
cufflinks 3.307        
cufflinks 1.536       Low

0 Strain